C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001DN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130699-ENSG00000149657 CGP 9606 20:61953469-62135378
GeneTranscriptPositionBiotype
ENSG00000130699 (TAF4)
TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa 		ENST00000252996 (TAF4-001) 61974798-62065810 protein_coding
ENST00000436129 (TAF4-009) 61975357-62008187 retained_intron
ENST00000474089 (TAF4-006) 61953469-61998187 protein_coding
ENST00000486599 (TAF4-003) 62008851-62010133 retained_intron
ENST00000488539 (TAF4-004) 62000568-62007561 protein_coding
ENST00000608458 (TAF4-007) 61975859-61981432 retained_intron
ENST00000608887 (TAF4-010) 62012874-62064366 processed_transcript
ENST00000609041 (TAF4-008) 62004509-62006995 retained_intron
ENST00000609045 (TAF4-011) 62010067-62012883 processed_transcript
ENSG00000149657 (LSM14B)
LSM14B, SCD6 homolog B (S. cerevisiae) 		ENST00000279068 (LSM14B-001) 62122507-62135378 protein_coding
ENST00000279069 (LSM14B-002) 62122527-62130605 protein_coding
ENST00000361670 (LSM14B-006) 62123152-62131506 protein_coding
ENST00000370915 (LSM14B-005) 62122461-62128030 protein_coding
ENST00000400318 (LSM14B-003) 62122482-62130666 protein_coding
ENSG00000235018 (RP11-11M20.2)
 ENST00000442115 (RP11-11M20.2-001) 62037429-62037956 processed_pseudogene
ENSG00000280448 (AL078633.1)
 ENST00000624523 (AL078633.1-201) 62134680-62135089 pseudogene
CIL_0001DN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039117-ENSMUSG00000039108 CGP 10090 2:179912146-180035465
GeneTranscriptPositionBiotype
ENSMUSG00000039108 (Lsm14b)
LSM14 homolog B (SCD6, S. cerevisiae) 		ENSMUST00000055485 (Lsm14b-001) 180024987-180035461 protein_coding
ENSMUST00000058764 (Lsm14b-002) 180026398-180035465 protein_coding
ENSMUST00000140257 (Lsm14b-003) 180027909-180033810 processed_transcript
ENSMUSG00000039117 (Taf4a)
TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor 		ENSMUST00000041618 (Taf4a-201) 179912146-179976646 protein_coding
ENSMUST00000131358 (Taf4a-001) 179912152-179975559 protein_coding
ENSMUST00000154961 (Taf4a-003) 179922004-179929355 processed_transcript
ENSMUST00000155335 (Taf4a-002) 179921228-179922208 processed_transcript
ENSMUSG00000082850 (Gm14299)
predicted gene 14299 		ENSMUST00000117586 (Gm14299-001) 179993188-179993584 processed_pseudogene
ENSMUSG00000085704 (4921531C22Rik)
RIKEN cDNA 4921531C22 gene 		ENSMUST00000150145 (4921531C22Rik-001) 179976853-179979013 processed_transcript
ENSMUST00000153188 (4921531C22Rik-002) 179975993-179977987 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001DN_0001ENSG00000130699ENST00000252996ENST00000436129ENST00000474089ENST00000486599ENST00000488539ENST00000608458ENST00000608887ENST00000609041ENST00000609045ENSG00000149657ENST00000279068ENST00000279069ENST00000361670ENST00000370915ENST00000400318ENSG00000235018ENST00000442115ENSG00000280448ENST00000624523CIL_0001DN_0002ENSMUSG00000039108ENSMUST00000055485ENSMUST00000058764ENSMUST00000140257ENSMUSG00000039117ENSMUST00000041618ENSMUST00000131358ENSMUST00000154961ENSMUST00000155335ENSMUSG00000082850ENSMUST00000117586ENSMUSG00000085704ENSMUST00000150145ENSMUST00000153188
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001DN_0001ENSG00000130699ENST00000252996ENST00000436129ENST00000488539ENST00000608458ENST00000609041ENSG00000149657ENST00000279068ENST00000279069ENST00000361670ENST00000370915ENST00000400318ENSG00000235018ENST00000442115ENSG00000280448ENST00000624523CIL_0001DN_0002ENSMUSG00000039108ENSMUST00000055485ENSMUST00000058764ENSMUST00000140257ENSMUSG00000039117ENSMUST00000041618ENSMUST00000131358ENSMUST00000154961ENSMUSG00000082850ENSMUST00000117586ENSMUSG00000085704ENSMUST00000150145
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130699 ENST00000252996 3.371±0.00 2.512±0.00 N/A N/A 1.829±0.87 2.453±1.35 2.340±0.00 1.932±1.79 1.494±0.00 1.431±0.00 2.442±1.23 6.586±2.24 3.166±2.10 9.073±2.94
ENST00000436129 N/A N/A N/A 0.181±0.00 1.643±0.00 N/A N/A N/A N/A N/A 1.909±0.00 0.843±0.00 N/A N/A
ENST00000474089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488539 N/A N/A 1.801±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608458 N/A N/A 0.789±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.376±0.00
ENST00000608887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609041 N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000149657 ENST00000279068 6.012±0.00 4.973±0.00 1.273±0.00 6.820±3.26 3.556±2.53 3.220±1.94 1.159±0.00 7.322±0.00 4.582±0.00 4.504±1.72 N/A 18.820±18.00 10.033±5.67 34.079±14.68
ENST00000279069 N/A N/A N/A N/A N/A N/A N/A N/A 5.749±0.00 N/A N/A N/A N/A N/A
ENST00000361670 N/A N/A 1.419±0.00 N/A N/A 1.131±0.00 N/A 0.773±0.00 N/A N/A N/A 16.843±0.00 7.509±0.00 41.682±0.00
ENST00000370915 N/A N/A N/A N/A N/A 2.504±0.00 N/A N/A N/A 1.263±0.00 N/A N/A N/A N/A
ENST00000400318 N/A N/A 2.650±0.00 N/A N/A N/A N/A N/A N/A 4.529±0.00 N/A N/A N/A N/A
ENSG00000235018 ENST00000442115 N/A N/A 1.642±0.00 N/A 0.090±0.02 1.337±0.00 0.093±0.00 N/A 0.690±0.00 0.916±0.00 0.672±0.00 0.339±0.34 N/A 0.181±0.06
ENSG00000280448 ENST00000624523 11.348±0.00 11.476±0.00 N/A N/A N/A 17.451±0.00 N/A N/A N/A 6.563±2.13 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039108 ENSMUST00000055485 9.635±2.04 9.131±4.68 14.961±0.40 21.909±4.09 6.871±0.87 11.398±2.54 2.775±0.13 9.975±1.17 6.302±1.77 8.522±0.57 3.290±2.45 18.893±7.50 6.017±0.28 10.610±4.71
ENSMUST00000058764 6.354±0.00 6.457±0.58 4.900±0.24 24.577±18.18 3.574±0.87 N/A N/A 2.011±0.27 1.821±0.35 3.494±0.71 6.014±0.00 7.724±2.31 2.429±1.14 3.786±1.18
ENSMUST00000140257 N/A N/A N/A 36.460±0.00 N/A N/A N/A N/A N/A N/A N/A 81.627±0.00 21.243±5.85 59.905±0.00
ENSMUSG00000039117 ENSMUST00000041618 N/A N/A N/A N/A N/A 1.486±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131358 2.836±1.54 6.212±0.66 4.366±0.36 5.424±3.12 4.360±2.14 7.937±1.11 2.053±0.69 3.212±0.50 2.943±1.72 5.338±0.33 2.485±0.70 4.876±1.38 5.207±2.91 2.436±0.77
ENSMUST00000154961 N/A N/A N/A 29.703±0.00 N/A N/A N/A N/A N/A N/A N/A 65.091±0.00 69.667±0.06 14.452±0.00
ENSMUST00000155335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082850 ENSMUST00000117586 N/A N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A N/A N/A 0.370±0.17
ENSMUSG00000085704 ENSMUST00000150145 1.763±0.14 N/A N/A N/A N/A N/A 1.359±0.00 N/A N/A N/A 0.784±0.00 N/A N/A 4.541±0.64
ENSMUST00000153188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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