C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039117 Taf4a 10090 - 2:179912146-179976646 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041618 Taf4a-201 179912146-179976646 protein_coding
  ENSMUST00000131358 Taf4a-001 179912152-179975559 protein_coding
  ENSMUST00000154961 Taf4a-003 179922004-179929355 processed_transcript
  ENSMUST00000155335 Taf4a-002 179921228-179922208 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041618ENSMUST00000131358ENSMUST00000154961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041618 N/A N/A N/A N/A N/A 1.486±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131358 2.836±1.54 6.212±0.66 4.366±0.36 5.424±3.12 4.360±2.14 7.937±1.11 2.053±0.69 3.212±0.50 2.943±1.72 5.338±0.33 2.485±0.70 4.876±1.38 5.207±2.91 2.436±0.77
ENSMUST00000154961 N/A N/A N/A 29.703±0.00 N/A N/A N/A N/A N/A N/A N/A 65.091±0.00 69.667±0.06 14.452±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000693 CIL_000693_0003 CGP 2:179442431-179976646
CIL_0001DN CIL_0001DN_0002 CGP 2:179912146-180035465

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001541 IMP ovarian follicle development
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0005737 IEA cytoplasm
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 IEA transcription initiation from RNA polymerase II promoter
GO:0033276 IEA transcription factor TFTC complex
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046982 IEA protein heterodimerization activity
GO:0071339 IEA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036750 TAF4 (1 of 2) TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa protein_coding Danio_rerio
ENSDARG00000068192 TAF4 (2 of 2) TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa protein_coding Danio_rerio
ENSG00000130699 TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa protein_coding Homo_sapiens

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