C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000693_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015002-ENSDARG00000036750 CGP 7955 11:21011516-21266548
GeneTranscriptPositionBiotype
ENSDARG00000015002 (cdh4)
cadherin 4, retinal 		ENSDART00000097934 (cdh4-201) 21011516-21202573 protein_coding
ENSDARG00000036750 (TAF4 (1 of 2))
TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa 		ENSDART00000053362 (TAF4 (1 of 2)-201) 21264070-21266548 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_000693_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179242-ENSG00000130699 CGP 9606 20:61252426-62065810
GeneTranscriptPositionBiotype
ENSG00000130699 (TAF4)
TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa 		ENST00000252996 (TAF4-001) 61974798-62065810 protein_coding
ENST00000436129 (TAF4-009) 61975357-62008187 retained_intron
ENST00000474089 (TAF4-006) 61953469-61998187 protein_coding
ENST00000486599 (TAF4-003) 62008851-62010133 retained_intron
ENST00000488539 (TAF4-004) 62000568-62007561 protein_coding
ENST00000608458 (TAF4-007) 61975859-61981432 retained_intron
ENST00000608887 (TAF4-010) 62012874-62064366 processed_transcript
ENST00000609041 (TAF4-008) 62004509-62006995 retained_intron
ENST00000609045 (TAF4-011) 62010067-62012883 processed_transcript
ENSG00000179242 (CDH4)
cadherin 4, type 1, R-cadherin (retinal) 		ENST00000543233 (CDH4-003) 61599761-61937249 protein_coding
ENST00000611855 (CDH4-002) 61570135-61937218 protein_coding
ENST00000614565 (CDH4-001) 61252426-61940617 protein_coding
ENSG00000179253 (RP11-429E11.3)
 ENST00000317652 (RP11-429E11.3-001) 61717506-61719748 antisense
ENSG00000235018 (RP11-11M20.2)
 ENST00000442115 (RP11-11M20.2-001) 62037429-62037956 processed_pseudogene
ENSG00000276786 (WI2-8325B5.1)
 ENST00000617215 (WI2-8325B5.1-001) 61369879-61370855 lincRNA
ENSG00000277270 (RP5-827E24.1)
 ENST00000615619 (RP5-827E24.1-003) 61434625-61437367 lincRNA
ENST00000616819 (RP5-827E24.1-001) 61435639-61437547 lincRNA
ENST00000620506 (RP5-827E24.1-002) 61436499-61437541 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_000693_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000305-ENSMUSG00000039117 CGP 10090 2:179442431-179976646
GeneTranscriptPositionBiotype
ENSMUSG00000000305 (Cdh4)
cadherin 4 		ENSMUST00000000314 (Cdh4-001) 179442431-179899373 protein_coding
ENSMUST00000098996 (Cdh4-201) 179893909-179894693 protein_coding
ENSMUST00000108911 (Cdh4-002) 179442622-179847704 protein_coding
ENSMUST00000124708 (Cdh4-003) 179444233-179780319 processed_transcript
ENSMUST00000129659 (Cdh4-005) 179893884-179896149 retained_intron
ENSMUST00000136411 (Cdh4-004) 179777163-179797511 processed_transcript
ENSMUSG00000039117 (Taf4a)
TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor 		ENSMUST00000041618 (Taf4a-201) 179912146-179976646 protein_coding
ENSMUST00000131358 (Taf4a-001) 179912152-179975559 protein_coding
ENSMUST00000154961 (Taf4a-003) 179922004-179929355 processed_transcript
ENSMUST00000155335 (Taf4a-002) 179921228-179922208 processed_transcript
ENSMUSG00000083410 (Gm14300)
predicted gene 14300 		ENSMUST00000120800 (Gm14300-001) 179612622-179613567 processed_pseudogene
ENSMUSG00000085704 (4921531C22Rik)
RIKEN cDNA 4921531C22 gene 		ENSMUST00000150145 (4921531C22Rik-001) 179976853-179979013 processed_transcript
ENSMUST00000153188 (4921531C22Rik-002) 179975993-179977987 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000693_0001ENSDARG00000015002ENSDART00000097934ENSDARG00000036750ENSDART00000053362CIL_000693_0002ENSG00000130699ENST00000252996ENST00000436129ENST00000474089ENST00000486599ENST00000488539ENST00000608458ENST00000608887ENST00000609041ENST00000609045ENSG00000179242ENST00000543233ENST00000611855ENST00000614565ENSG00000179253ENST00000317652ENSG00000235018ENST00000442115ENSG00000276786ENST00000617215ENSG00000277270ENST00000615619ENST00000616819ENST00000620506CIL_000693_0003ENSMUSG00000000305ENSMUST00000000314ENSMUST00000098996ENSMUST00000108911ENSMUST00000124708ENSMUST00000129659ENSMUST00000136411ENSMUSG00000039117ENSMUST00000041618ENSMUST00000131358ENSMUST00000154961ENSMUST00000155335ENSMUSG00000083410ENSMUST00000120800ENSMUSG00000085704ENSMUST00000150145ENSMUST00000153188
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000693_0001ENSDARG00000015002ENSDART00000097934ENSDARG00000036750ENSDART00000053362CIL_000693_0002ENSG00000130699ENST00000252996ENST00000436129ENST00000488539ENST00000608458ENST00000609041ENSG00000179242ENST00000543233ENST00000611855ENST00000614565ENSG00000179253ENST00000317652ENSG00000235018ENST00000442115ENSG00000276786ENST00000617215ENSG00000277270ENST00000615619ENST00000616819ENST00000620506CIL_000693_0003ENSMUSG00000000305ENSMUST00000000314ENSMUST00000108911ENSMUST00000129659ENSMUST00000136411ENSMUSG00000039117ENSMUST00000041618ENSMUST00000131358ENSMUST00000154961ENSMUSG00000083410ENSMUST00000120800ENSMUSG00000085704ENSMUST00000150145
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015002 ENSDART00000097934 N/A N/A N/A 5.435±5.35 N/A N/A 0.465±0.20 0.189±0.14 0.042±0.00 N/A 0.553±0.00 N/A N/A N/A
ENSDARG00000036750 ENSDART00000053362 N/A N/A N/A 8.398±2.24 N/A N/A 5.331±1.29 16.793±0.00 0.967±0.00 N/A 3.148±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130699 ENST00000252996 3.371±0.00 2.512±0.00 N/A N/A 1.829±0.87 2.453±1.35 2.340±0.00 1.932±1.79 1.494±0.00 1.431±0.00 2.442±1.23 6.586±2.24 3.166±2.10 9.073±2.94
ENST00000436129 N/A N/A N/A 0.181±0.00 1.643±0.00 N/A N/A N/A N/A N/A 1.909±0.00 0.843±0.00 N/A N/A
ENST00000474089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488539 N/A N/A 1.801±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608458 N/A N/A 0.789±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.376±0.00
ENST00000608887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609041 N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179242 ENST00000543233 N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A 0.020±0.00 N/A 0.154±0.01 N/A N/A N/A
ENST00000611855 N/A N/A N/A N/A 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614565 0.020±0.00 N/A 0.051±0.00 2.000±1.73 0.059±0.00 0.027±0.00 0.032±0.01 0.060±0.00 N/A 0.286±0.00 0.143±0.10 N/A 0.144±0.08 0.377±0.05
ENSG00000179253 ENST00000317652 0.037±0.00 0.125±0.00 0.085±0.00 0.090±0.03 0.010±0.00 N/A 0.036±0.00 0.170±0.00 0.017±0.00 0.090±0.07 0.101±0.00 N/A N/A 0.009±0.00
ENSG00000235018 ENST00000442115 N/A N/A 1.642±0.00 N/A 0.090±0.02 1.337±0.00 0.093±0.00 N/A 0.690±0.00 0.916±0.00 0.672±0.00 0.339±0.34 N/A 0.181±0.06
ENSG00000276786 ENST00000617215 N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000277270 ENST00000615619 N/A 0.101±0.00 N/A 0.571±0.00 N/A N/A 0.032±0.00 0.105±0.00 N/A N/A N/A N/A N/A 0.094±0.00
ENST00000616819 N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620506 N/A N/A N/A 0.250±0.00 N/A N/A N/A N/A 0.417±0.00 N/A N/A 0.069±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000305 ENSMUST00000000314 0.648±0.62 1.240±0.43 1.631±0.19 11.629±7.19 0.306±0.08 0.154±0.05 0.246±0.12 0.489±0.11 0.097±0.03 0.759±0.23 1.807±0.87 0.878±0.28 0.317±0.11 0.066±0.04
ENSMUST00000098996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000108911 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.127±0.00
ENSMUST00000124708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129659 N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A N/A N/A
ENSMUST00000136411 0.117±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039117 ENSMUST00000041618 N/A N/A N/A N/A N/A 1.486±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131358 2.836±1.54 6.212±0.66 4.366±0.36 5.424±3.12 4.360±2.14 7.937±1.11 2.053±0.69 3.212±0.50 2.943±1.72 5.338±0.33 2.485±0.70 4.876±1.38 5.207±2.91 2.436±0.77
ENSMUST00000154961 N/A N/A N/A 29.703±0.00 N/A N/A N/A N/A N/A N/A N/A 65.091±0.00 69.667±0.06 14.452±0.00
ENSMUST00000155335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083410 ENSMUST00000120800 N/A N/A 0.014±0.00 0.112±0.05 0.185±0.00 0.157±0.04 N/A 0.070±0.03 0.029±0.01 N/A N/A 0.038±0.00 0.223±0.26 0.251±0.13
ENSMUSG00000085704 ENSMUST00000150145 1.763±0.14 N/A N/A N/A N/A N/A 1.359±0.00 N/A N/A N/A 0.784±0.00 N/A N/A 4.541±0.64
ENSMUST00000153188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading