C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000693_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015002-ENSDARG00000036750 CGP 7955 11:21011516-21266548
GeneTranscriptPositionBiotype
ENSDARG00000015002 (cdh4)
cadherin 4, retinal 		ENSDART00000097934 (cdh4-201) 21011516-21202573 protein_coding
ENSDARG00000036750 (TAF4 (1 of 2))
TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa 		ENSDART00000053362 (TAF4 (1 of 2)-201) 21264070-21266548 protein_coding
CIL_000693_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179242-ENSG00000130699 CGP 9606 20:61252426-62065810
GeneTranscriptPositionBiotype
ENSG00000130699 (TAF4)
TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa 		ENST00000252996 (TAF4-001) 61974798-62065810 protein_coding
ENST00000436129 (TAF4-009) 61975357-62008187 retained_intron
ENST00000474089 (TAF4-006) 61953469-61998187 protein_coding
ENST00000486599 (TAF4-003) 62008851-62010133 retained_intron
ENST00000488539 (TAF4-004) 62000568-62007561 protein_coding
ENST00000608458 (TAF4-007) 61975859-61981432 retained_intron
ENST00000608887 (TAF4-010) 62012874-62064366 processed_transcript
ENST00000609041 (TAF4-008) 62004509-62006995 retained_intron
ENST00000609045 (TAF4-011) 62010067-62012883 processed_transcript
ENSG00000179242 (CDH4)
cadherin 4, type 1, R-cadherin (retinal) 		ENST00000543233 (CDH4-003) 61599761-61937249 protein_coding
ENST00000611855 (CDH4-002) 61570135-61937218 protein_coding
ENST00000614565 (CDH4-001) 61252426-61940617 protein_coding
ENSG00000179253 (RP11-429E11.3)
 ENST00000317652 (RP11-429E11.3-001) 61717506-61719748 antisense
ENSG00000235018 (RP11-11M20.2)
 ENST00000442115 (RP11-11M20.2-001) 62037429-62037956 processed_pseudogene
ENSG00000276786 (WI2-8325B5.1)
 ENST00000617215 (WI2-8325B5.1-001) 61369879-61370855 lincRNA
ENSG00000277270 (RP5-827E24.1)
 ENST00000615619 (RP5-827E24.1-003) 61434625-61437367 lincRNA
ENST00000616819 (RP5-827E24.1-001) 61435639-61437547 lincRNA
ENST00000620506 (RP5-827E24.1-002) 61436499-61437541 lincRNA
CIL_000693_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000305-ENSMUSG00000039117 CGP 10090 2:179442431-179976646
GeneTranscriptPositionBiotype
ENSMUSG00000000305 (Cdh4)
cadherin 4 		ENSMUST00000000314 (Cdh4-001) 179442431-179899373 protein_coding
ENSMUST00000098996 (Cdh4-201) 179893909-179894693 protein_coding
ENSMUST00000108911 (Cdh4-002) 179442622-179847704 protein_coding
ENSMUST00000124708 (Cdh4-003) 179444233-179780319 processed_transcript
ENSMUST00000129659 (Cdh4-005) 179893884-179896149 retained_intron
ENSMUST00000136411 (Cdh4-004) 179777163-179797511 processed_transcript
ENSMUSG00000039117 (Taf4a)
TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor 		ENSMUST00000041618 (Taf4a-201) 179912146-179976646 protein_coding
ENSMUST00000131358 (Taf4a-001) 179912152-179975559 protein_coding
ENSMUST00000154961 (Taf4a-003) 179922004-179929355 processed_transcript
ENSMUST00000155335 (Taf4a-002) 179921228-179922208 processed_transcript
ENSMUSG00000083410 (Gm14300)
predicted gene 14300 		ENSMUST00000120800 (Gm14300-001) 179612622-179613567 processed_pseudogene
ENSMUSG00000085704 (4921531C22Rik)
RIKEN cDNA 4921531C22 gene 		ENSMUST00000150145 (4921531C22Rik-001) 179976853-179979013 processed_transcript
ENSMUST00000153188 (4921531C22Rik-002) 179975993-179977987 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000693_0001ENSDARG00000015002ENSDART00000097934ENSDARG00000036750ENSDART00000053362CIL_000693_0002ENSG00000130699ENST00000252996ENST00000436129ENST00000474089ENST00000486599ENST00000488539ENST00000608458ENST00000608887ENST00000609041ENST00000609045ENSG00000179242ENST00000543233ENST00000611855ENST00000614565ENSG00000179253ENST00000317652ENSG00000235018ENST00000442115ENSG00000276786ENST00000617215ENSG00000277270ENST00000615619ENST00000616819ENST00000620506CIL_000693_0003ENSMUSG00000000305ENSMUST00000000314ENSMUST00000098996ENSMUST00000108911ENSMUST00000124708ENSMUST00000129659ENSMUST00000136411ENSMUSG00000039117ENSMUST00000041618ENSMUST00000131358ENSMUST00000154961ENSMUST00000155335ENSMUSG00000083410ENSMUST00000120800ENSMUSG00000085704ENSMUST00000150145ENSMUST00000153188
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000693_0001ENSDARG00000015002ENSDART00000097934ENSDARG00000036750ENSDART00000053362CIL_000693_0002ENSG00000130699ENST00000252996ENST00000436129ENST00000488539ENST00000608458ENST00000609041ENSG00000179242ENST00000543233ENST00000611855ENST00000614565ENSG00000179253ENST00000317652ENSG00000235018ENST00000442115ENSG00000276786ENST00000617215ENSG00000277270ENST00000615619ENST00000616819ENST00000620506CIL_000693_0003ENSMUSG00000000305ENSMUST00000000314ENSMUST00000108911ENSMUST00000129659ENSMUST00000136411ENSMUSG00000039117ENSMUST00000041618ENSMUST00000131358ENSMUST00000154961ENSMUSG00000083410ENSMUST00000120800ENSMUSG00000085704ENSMUST00000150145
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015002 ENSDART00000097934 N/A N/A N/A 5.435±5.35 N/A N/A 0.465±0.20 0.189±0.14 0.042±0.00 N/A 0.553±0.00 N/A N/A N/A
ENSDARG00000036750 ENSDART00000053362 N/A N/A N/A 8.398±2.24 N/A N/A 5.331±1.29 16.793±0.00 0.967±0.00 N/A 3.148±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130699 ENST00000252996 3.371±0.00 2.512±0.00 N/A N/A 1.829±0.87 2.453±1.35 2.340±0.00 1.932±1.79 1.494±0.00 1.431±0.00 2.442±1.23 6.586±2.24 3.166±2.10 9.073±2.94
ENST00000436129 N/A N/A N/A 0.181±0.00 1.643±0.00 N/A N/A N/A N/A N/A 1.909±0.00 0.843±0.00 N/A N/A
ENST00000474089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488539 N/A N/A 1.801±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608458 N/A N/A 0.789±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.376±0.00
ENST00000608887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609041 N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179242 ENST00000543233 N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A 0.020±0.00 N/A 0.154±0.01 N/A N/A N/A
ENST00000611855 N/A N/A N/A N/A 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614565 0.020±0.00 N/A 0.051±0.00 2.000±1.73 0.059±0.00 0.027±0.00 0.032±0.01 0.060±0.00 N/A 0.286±0.00 0.143±0.10 N/A 0.144±0.08 0.377±0.05
ENSG00000179253 ENST00000317652 0.037±0.00 0.125±0.00 0.085±0.00 0.090±0.03 0.010±0.00 N/A 0.036±0.00 0.170±0.00 0.017±0.00 0.090±0.07 0.101±0.00 N/A N/A 0.009±0.00
ENSG00000235018 ENST00000442115 N/A N/A 1.642±0.00 N/A 0.090±0.02 1.337±0.00 0.093±0.00 N/A 0.690±0.00 0.916±0.00 0.672±0.00 0.339±0.34 N/A 0.181±0.06
ENSG00000276786 ENST00000617215 N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000277270 ENST00000615619 N/A 0.101±0.00 N/A 0.571±0.00 N/A N/A 0.032±0.00 0.105±0.00 N/A N/A N/A N/A N/A 0.094±0.00
ENST00000616819 N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620506 N/A N/A N/A 0.250±0.00 N/A N/A N/A N/A 0.417±0.00 N/A N/A 0.069±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000305 ENSMUST00000000314 0.648±0.62 1.240±0.43 1.631±0.19 11.629±7.19 0.306±0.08 0.154±0.05 0.246±0.12 0.489±0.11 0.097±0.03 0.759±0.23 1.807±0.87 0.878±0.28 0.317±0.11 0.066±0.04
ENSMUST00000098996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000108911 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.127±0.00
ENSMUST00000124708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129659 N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A N/A N/A
ENSMUST00000136411 0.117±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039117 ENSMUST00000041618 N/A N/A N/A N/A N/A 1.486±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131358 2.836±1.54 6.212±0.66 4.366±0.36 5.424±3.12 4.360±2.14 7.937±1.11 2.053±0.69 3.212±0.50 2.943±1.72 5.338±0.33 2.485±0.70 4.876±1.38 5.207±2.91 2.436±0.77
ENSMUST00000154961 N/A N/A N/A 29.703±0.00 N/A N/A N/A N/A N/A N/A N/A 65.091±0.00 69.667±0.06 14.452±0.00
ENSMUST00000155335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083410 ENSMUST00000120800 N/A N/A 0.014±0.00 0.112±0.05 0.185±0.00 0.157±0.04 N/A 0.070±0.03 0.029±0.01 N/A N/A 0.038±0.00 0.223±0.26 0.251±0.13
ENSMUSG00000085704 ENSMUST00000150145 1.763±0.14 N/A N/A N/A N/A N/A 1.359±0.00 N/A N/A N/A 0.784±0.00 N/A N/A 4.541±0.64
ENSMUST00000153188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading