C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: charged multivesicular body protein 2A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130724 CHMP2A 9606 - 19:58551566-58555124 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000312547 CHMP2A-001 58551566-58555124 protein_coding
  ENST00000596708 CHMP2A-007 58552055-58554960 protein_coding
  ENST00000597209 CHMP2A-008 58552098-58554993 retained_intron
  ENST00000597848 CHMP2A-006 58554046-58554990 protein_coding
  ENST00000600006 CHMP2A-009 58551566-58554097 protein_coding
  ENST00000600118 CHMP2A-003 58551566-58554638 protein_coding
  ENST00000600804 CHMP2A-005 58553748-58555090 retained_intron
  ENST00000601220 CHMP2A-004 58551566-58554973 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000312547ENST00000596708ENST00000597848ENST00000601220
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000312547 79.454±0.00 84.412±0.00 4.358±0.00 44.274±39.57 53.642±44.47 43.370±37.97 19.992±17.76 60.756±53.21 27.070±20.04 41.385±35.17 65.134±0.00 42.169±33.00 89.024±29.33 45.833±30.92
ENST00000596708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.858±0.00 51.542±0.00 35.142±0.00
ENST00000597848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 104.716±0.00 232.487±0.00 96.690±0.00
ENST00000601220 31.576±0.00 20.739±0.00 4.516±0.00 19.067±3.98 15.793±0.00 11.144±0.00 9.493±2.14 15.735±1.39 14.076±11.15 14.915±0.00 23.343±7.24 15.768±10.77 29.740±7.18 17.200±2.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Z2 CIL_0006Z2_0001 CGP 19:58544091-58555124
CIL_00070T CIL_00070T_0001 CGP 19:58551566-58558960

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0007034 IEA vacuolar transport
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0019904 IPI protein domain specific binding
GO:0045184 IMP establishment of protein localization
GO:0050792 IMP regulation of viral process
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:1902188 IMP positive regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053979 bc2 putative breast adenocarcinoma marker protein_coding Danio_rerio
ENSMUSG00000033916 Chmp2a charged multivesicular body protein 2A protein_coding Mus_musculus

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