C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: charged multivesicular body protein 2A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000312547 CHMP2A-001 ENSG00000130724 9606 - 19:58551566-58555124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000312547
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000312547 79.454±0.00 84.412±0.00 4.358±0.00 44.274±39.57 53.642±44.47 43.370±37.97 19.992±17.76 60.756±53.21 27.070±20.04 41.385±35.17 65.134±0.00 42.169±33.00 89.024±29.33 45.833±30.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Z2 CIL_0006Z2_0001 CGP 19:58544091-58555124
CIL_00070T CIL_00070T_0001 CGP 19:58551566-58558960

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0007034 IEA vacuolar transport
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0019904 IPI protein domain specific binding
GO:0045184 IMP establishment of protein localization
GO:0050792 IMP regulation of viral process
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:1902188 IMP positive regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005711 Chmp2a-201 protein_coding Mus_musculus 0 900
ENSMUST00000160999 Gm8185-001 processed_pseudogene Mus_musculus 0 765
ENSDART00000076103 bc2-001 protein_coding Danio_rerio 0 375
ENSDART00000139255 bc2-005 retained_intron Danio_rerio 0 348

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