C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: castor zinc finger 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130940 CASZ1 9606 - 1:10636604-10796650 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344008 CASZ1-001 10647213-10796650 protein_coding
  ENST00000377022 CASZ1-003 10636604-10796648 protein_coding
  ENST00000447850 CASZ1-009 10642082-10645076 protein_coding
  ENST00000472814 CASZ1-008 10704196-10705575 processed_transcript
  ENST00000478524 CASZ1-004 10637121-10638763 processed_transcript
  ENST00000478728 CASZ1-006 10660737-10693912 processed_transcript
  ENST00000490176 CASZ1-005 10650484-10651100 retained_intron
  ENST00000492173 CASZ1-002 10658007-10661398 retained_intron
  ENST00000496432 CASZ1-007 10652984-10694479 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377022ENST00000478524ENST00000478728ENST00000492173ENST00000496432
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377022 0.456±0.00 0.049±0.04 0.614±0.13 1.189±0.00 1.831±1.70 0.888±0.83 0.379±0.08 1.100±0.74 3.096±2.67 1.066±0.66 0.590±0.00 0.720±0.00
ENST00000478524 N/A N/A N/A N/A N/A 0.845±0.00 N/A N/A N/A N/A N/A N/A
ENST00000478728 N/A N/A N/A N/A N/A 0.436±0.00 N/A N/A N/A N/A N/A N/A
ENST00000492173 N/A 0.240±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496432 N/A 0.020±0.00 N/A N/A N/A 0.111±0.00 1.365±0.00 1.574±0.24 N/A 0.975±0.00 0.458±0.07 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IM CIL_0008IM_0001 VISTA 1:10233066-10834152
CIL_0007WE CIL_0007WE_0001 VISTA 1:10372013-10973061
CIL_00085P CIL_00085P_0001 VISTA 1:10397607-10998574
CIL_00082Y CIL_00082Y_0001 VISTA 1:10421182-11021687
CIL_0008S2 CIL_0008S2_0001 VISTA 1:10435049-11039184
CIL_00019R CIL_00019R_0002 CGP 1:10472288-10796650
CIL_0008RU CIL_0008RU_0001 VISTA 1:10491513-11092116
CIL_0007N5 CIL_0007N5_0001 UCNEbase 1:10513883-10905812
CIL_0008JG CIL_0008JG_0001 VISTA 1:10565145-11165671
CIL_0008JY CIL_0008JY_0001 VISTA 1:10605072-11206087
CIL_00019Q CIL_00019Q_0002 CGP 1:10636604-10982037

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037030 casz1 castor zinc finger 1 protein_coding Danio_rerio
ENSMUSG00000028977 Casz1 castor zinc finger 1 protein_coding Mus_musculus

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