C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: KH domain containing, RNA binding, signal transduction associated 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131773 KHDRBS3 9606 + 8:135457457-135656722 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355849 KHDRBS3-001 135457457-135647610 protein_coding
  ENST00000517394 KHDRBS3-004 135458707-135557539 protein_coding
  ENST00000517859 KHDRBS3-007 135542674-135647419 nonsense_mediated_decay
  ENST00000518728 KHDRBS3-008 135606956-135647258 processed_transcript
  ENST00000519600 KHDRBS3-003 135538534-135549982 retained_intron
  ENST00000520981 KHDRBS3-002 135458547-135647610 protein_coding
  ENST00000521461 KHDRBS3-009 135607010-135656722 nonsense_mediated_decay
  ENST00000522079 KHDRBS3-012 135557456-135656467 processed_transcript
  ENST00000522433 KHDRBS3-010 135593331-135647184 processed_transcript
  ENST00000522578 KHDRBS3-011 135647735-135656513 processed_transcript
  ENST00000524199 KHDRBS3-005 135458087-135607027 protein_coding
  ENST00000524282 KHDRBS3-006 135542703-135647026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355849ENST00000517859ENST00000519600ENST00000522433ENST00000522578ENST00000524199ENST00000524282
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355849 2.670±0.00 1.752±0.00 1.415±0.00 10.679±1.25 1.393±0.42 3.116±2.25 1.684±1.22 6.625±5.98 3.802±1.03 2.755±0.00 6.050±3.53 3.044±1.97 1.095±0.44 37.387±8.38
ENST00000517859 N/A 1.524±0.00 N/A 11.462±0.00 1.221±0.27 2.637±0.67 N/A N/A N/A 0.701±0.00 3.829±0.00 N/A N/A N/A
ENST00000519600 N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A 0.106±0.00 N/A 0.076±0.00 N/A N/A
ENST00000522433 N/A 3.173±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 5.492±0.00 5.559±0.00 2.511±1.49 283.922±0.00
ENST00000522578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.562±0.00 N/A N/A
ENST00000524199 2.819±0.00 N/A N/A N/A N/A N/A 2.106±0.00 N/A N/A N/A N/A 2.124±0.00 0.349±0.00 46.678±3.95
ENST00000524282 3.600±0.00 2.808±0.00 3.430±0.00 26.418±0.00 4.792±0.00 4.924±3.66 0.919±0.00 1.472±0.00 2.890±0.00 3.701±0.00 N/A 1.527±0.00 1.414±0.89 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PU CIL_0004PU_0001 CGP 8:134477788-135656722
CIL_0004PR CIL_0004PR_0001 CGP 8:135457457-138496822

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 TAS spermatogenesis
GO:0017124 IEA SH3 domain binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086479 khdrbs3 KH domain containing, RNA binding, signal transduction associated 3 protein_coding Danio_rerio
ENSMUSG00000022332 Khdrbs3 KH domain containing, RNA binding, signal transduction associated 3 protein_coding Mus_musculus

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