C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004PR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131773-ENSG00000147724 CGP 9606 8:135457457-138496822
GeneTranscriptPositionBiotype
ENSG00000131773 (KHDRBS3)
KH domain containing, RNA binding, signal transduction associated 3 		ENST00000355849 (KHDRBS3-001) 135457457-135647610 protein_coding
ENST00000517394 (KHDRBS3-004) 135458707-135557539 protein_coding
ENST00000517859 (KHDRBS3-007) 135542674-135647419 nonsense_mediated_decay
ENST00000518728 (KHDRBS3-008) 135606956-135647258 processed_transcript
ENST00000519600 (KHDRBS3-003) 135538534-135549982 retained_intron
ENST00000520981 (KHDRBS3-002) 135458547-135647610 protein_coding
ENST00000521461 (KHDRBS3-009) 135607010-135656722 nonsense_mediated_decay
ENST00000522079 (KHDRBS3-012) 135557456-135656467 processed_transcript
ENST00000522433 (KHDRBS3-010) 135593331-135647184 processed_transcript
ENST00000522578 (KHDRBS3-011) 135647735-135656513 processed_transcript
ENST00000524199 (KHDRBS3-005) 135458087-135607027 protein_coding
ENST00000524282 (KHDRBS3-006) 135542703-135647026 protein_coding
ENSG00000253248 (RP11-149P24.1)
 ENST00000502901 (RP11-149P24.1-002) 136047021-136166122 lincRNA
ENST00000523150 (RP11-149P24.1-001) 136047047-136165995 lincRNA
ENSG00000253288 (RP11-238K6.1)
 ENST00000518973 (RP11-238K6.1-001) 137809444-138083570 lincRNA
ENSG00000253839 (RP11-431D12.1)
 ENST00000523232 (RP11-431D12.1-001) 136489448-136529876 lincRNA
ENSG00000253915 (MAPRE1P1)
MAPRE1 pseudogene 1 		ENST00000522077 (MAPRE1P1-001) 135625185-135625981 processed_pseudogene
ENSG00000253988 (RP11-489O18.1)
 ENST00000521793 (RP11-489O18.1-001) 138063268-138073240 lincRNA
ENSG00000254076 (CTD-3145H4.1)
 ENST00000523156 (CTD-3145H4.1-001) 137696724-137698467 processed_pseudogene
ENSG00000254101 (RP11-30J20.1)
 ENST00000517345 (RP11-30J20.1-003) 136536976-136798234 lincRNA
ENST00000520060 (RP11-30J20.1-002) 136530809-136731619 lincRNA
ENST00000520068 (RP11-30J20.1-005) 136789833-136815688 lincRNA
ENST00000521034 (RP11-30J20.1-006) 136797273-136984935 lincRNA
ENST00000521090 (RP11-30J20.1-004) 136780853-136810037 lincRNA
ENST00000521097 (RP11-30J20.1-007) 136789834-136897601 lincRNA
ENST00000524346 (RP11-30J20.1-001) 136530798-136897601 lincRNA
ENSG00000254361 (RP11-238K6.2)
 ENST00000519652 (RP11-238K6.2-001) 137852327-137929044 lincRNA
CIL_0004PR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022332-ENSMUSG00000036800 CGP 10090 15:68928420-71727838
GeneTranscriptPositionBiotype
ENSMUSG00000022332 (Khdrbs3)
KH domain containing, RNA binding, signal transduction associated 3 		ENSMUST00000022954 (Khdrbs3-201) 68928420-69093512 protein_coding
ENSMUSG00000036800 (Fam135b)
family with sequence similarity 135, member B 		ENSMUST00000022953 (Fam135b-201) 71445678-71727838 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004PR_0001ENSG00000131773ENST00000355849ENST00000517394ENST00000517859ENST00000518728ENST00000519600ENST00000520981ENST00000521461ENST00000522079ENST00000522433ENST00000522578ENST00000524199ENST00000524282ENSG00000253248ENST00000502901ENST00000523150ENSG00000253288ENST00000518973ENSG00000253839ENST00000523232ENSG00000253915ENST00000522077ENSG00000253988ENST00000521793ENSG00000254076ENST00000523156ENSG00000254101ENST00000517345ENST00000520060ENST00000520068ENST00000521034ENST00000521090ENST00000521097ENST00000524346ENSG00000254361ENST00000519652CIL_0004PR_0002ENSMUSG00000022332ENSMUST00000022954ENSMUSG00000036800ENSMUST00000022953
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004PR_0001ENSG00000131773ENST00000355849ENST00000517859ENST00000519600ENST00000522433ENST00000522578ENST00000524199ENST00000524282ENSG00000253248ENST00000502901ENST00000523150ENSG00000253288ENST00000518973ENSG00000253839ENST00000523232ENSG00000253915ENST00000522077ENSG00000253988ENST00000521793ENSG00000254076ENST00000523156ENSG00000254101ENST00000517345ENST00000520060ENST00000520068ENST00000521034ENST00000521090ENST00000524346ENSG00000254361ENST00000519652CIL_0004PR_0002ENSMUSG00000022332ENSMUST00000022954ENSMUSG00000036800ENSMUST00000022953
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131773 ENST00000355849 2.670±0.00 1.752±0.00 1.415±0.00 10.679±1.25 1.393±0.42 3.116±2.25 1.684±1.22 6.625±5.98 3.802±1.03 2.755±0.00 6.050±3.53 3.044±1.97 1.095±0.44 37.387±8.38
ENST00000517394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517859 N/A 1.524±0.00 N/A 11.462±0.00 1.221±0.27 2.637±0.67 N/A N/A N/A 0.701±0.00 3.829±0.00 N/A N/A N/A
ENST00000518728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519600 N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A 0.106±0.00 N/A 0.076±0.00 N/A N/A
ENST00000520981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522433 N/A 3.173±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 5.492±0.00 5.559±0.00 2.511±1.49 283.922±0.00
ENST00000522578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.562±0.00 N/A N/A
ENST00000524199 2.819±0.00 N/A N/A N/A N/A N/A 2.106±0.00 N/A N/A N/A N/A 2.124±0.00 0.349±0.00 46.678±3.95
ENST00000524282 3.600±0.00 2.808±0.00 3.430±0.00 26.418±0.00 4.792±0.00 4.924±3.66 0.919±0.00 1.472±0.00 2.890±0.00 3.701±0.00 N/A 1.527±0.00 1.414±0.89 N/A
ENSG00000253248 ENST00000502901 N/A N/A N/A 0.244±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00
ENST00000523150 N/A N/A N/A 0.560±0.49 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253288 ENST00000518973 0.011±0.00 0.008±0.00 0.183±0.00 0.036±0.00 0.007±0.00 0.002±0.00 0.014±0.01 0.066±0.00 0.009±0.00 0.165±0.13 N/A N/A N/A 0.069±0.02
ENSG00000253839 ENST00000523232 N/A N/A N/A 0.136±0.09 N/A 0.109±0.00 N/A N/A N/A 0.331±0.31 N/A 0.037±0.00 0.164±0.00 N/A
ENSG00000253915 ENST00000522077 N/A 0.119±0.00 0.695±0.00 N/A N/A N/A N/A N/A 0.266±0.00 0.258±0.05 N/A N/A N/A 0.256±0.12
ENSG00000253988 ENST00000521793 0.126±0.00 0.578±0.00 N/A 0.076±0.04 0.289±0.26 0.062±0.01 N/A 0.188±0.00 N/A 0.125±0.00 N/A 0.114±0.00 0.060±0.02 0.127±0.02
ENSG00000254076 ENST00000523156 N/A 0.010±0.00 N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000254101 ENST00000517345 N/A N/A N/A 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.330±0.00
ENST00000520060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.657±0.00 1.195±0.33
ENST00000520068 N/A N/A N/A 0.156±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.05 0.242±0.00
ENST00000521034 N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A 0.187±0.00 0.451±0.00
ENST00000521090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.234±0.04
ENST00000521097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524346 N/A N/A N/A N/A N/A N/A N/A 0.596±0.00 N/A N/A N/A N/A 0.601±0.33 0.387±0.00
ENSG00000254361 ENST00000519652 N/A N/A N/A 0.137±0.06 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022332 ENSMUST00000022954 5.410±2.29 10.323±4.40 16.583±0.50 52.574±6.33 2.911±0.92 7.342±3.08 12.300±4.51 7.410±2.31 4.697±2.08 5.112±2.52 5.313±1.27 18.297±5.34 1.980±0.42 18.510±6.52
ENSMUSG00000036800 ENSMUST00000022953 0.019±0.01 0.017±0.00 N/A 0.236±0.00 0.017±0.01 0.016±0.00 0.006±0.00 0.006±0.00 0.002±0.00 0.026±0.02 N/A 0.014±0.01 0.095±0.07 5.739±1.10

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