C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004PU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000066827-ENSG00000131773 CGP 9606 8:134477788-135656722
GeneTranscriptPositionBiotype
ENSG00000066827 (ZFAT)
zinc finger and AT hook domain containing 		ENST00000377838 (ZFAT-001) 134477792-134713038 protein_coding
ENST00000429442 (ZFAT-005) 134477792-134696558 protein_coding
ENST00000517307 (ZFAT-013) 134512574-134594885 processed_transcript
ENST00000518191 (ZFAT-011) 134608841-134696556 protein_coding
ENST00000518408 (ZFAT-010) 134478025-134565671 retained_intron
ENST00000519827 (ZFAT-012) 134583951-134600668 nonsense_mediated_decay
ENST00000520214 (ZFAT-006) 134478025-134696554 protein_coding
ENST00000520356 (ZFAT-009) 134477788-134696554 protein_coding
ENST00000520727 (ZFAT-007) 134477792-134696554 protein_coding
ENST00000521673 (ZFAT-015) 134478222-134510182 protein_coding
ENST00000522257 (ZFAT-016) 134608740-134639880 protein_coding
ENST00000522723 (ZFAT-014) 134509701-134511082 processed_transcript
ENST00000522974 (ZFAT-008) 134597544-134696554 retained_intron
ENST00000523040 (ZFAT-017) 134602807-134637593 processed_transcript
ENST00000523243 (ZFAT-002) 134477792-134713049 nonsense_mediated_decay
ENST00000523399 (ZFAT-004) 134478393-134712962 protein_coding
ENST00000523924 (ZFAT-003) 134477792-134713038 nonsense_mediated_decay
ENSG00000131773 (KHDRBS3)
KH domain containing, RNA binding, signal transduction associated 3 		ENST00000355849 (KHDRBS3-001) 135457457-135647610 protein_coding
ENST00000517394 (KHDRBS3-004) 135458707-135557539 protein_coding
ENST00000517859 (KHDRBS3-007) 135542674-135647419 nonsense_mediated_decay
ENST00000518728 (KHDRBS3-008) 135606956-135647258 processed_transcript
ENST00000519600 (KHDRBS3-003) 135538534-135549982 retained_intron
ENST00000520981 (KHDRBS3-002) 135458547-135647610 protein_coding
ENST00000521461 (KHDRBS3-009) 135607010-135656722 nonsense_mediated_decay
ENST00000522079 (KHDRBS3-012) 135557456-135656467 processed_transcript
ENST00000522433 (KHDRBS3-010) 135593331-135647184 processed_transcript
ENST00000522578 (KHDRBS3-011) 135647735-135656513 processed_transcript
ENST00000524199 (KHDRBS3-005) 135458087-135607027 protein_coding
ENST00000524282 (KHDRBS3-006) 135542703-135647026 protein_coding
ENSG00000207582 (MIR30B)
microRNA 30b 		ENST00000384850 (MIR30B-201) 134800520-134800607 miRNA
ENSG00000248492 (ZFAT-AS1)
ZFAT antisense RNA 1 		ENST00000505776 (ZFAT-AS1-001) 134598071-134600689 antisense
ENSG00000251218 (RP11-1057B8.2)
 ENST00000505083 (RP11-1057B8.2-001) 134849935-134881899 lincRNA
ENSG00000253433 (AC083843.3)
non-protein coding RNA 250 		ENST00000519500 (AC083843.3-001) 134838069-134842637 lincRNA
ENSG00000253915 (MAPRE1P1)
MAPRE1 pseudogene 1 		ENST00000522077 (MAPRE1P1-001) 135625185-135625981 processed_pseudogene
ENSG00000254028 (AC083843.2)
 ENST00000521444 (AC083843.2-001) 134832747-134834482 lincRNA
ENSG00000254372 (RP11-343P9.1)
 ENST00000518674 (RP11-343P9.1-001) 135455865-135456952 antisense
ENSG00000259820 (AC083843.1)
 ENST00000568248 (AC083843.1-001) 134792020-134798272 lincRNA
ENSG00000271048 (CTD-2342N23.2)
 ENST00000605856 (CTD-2342N23.2-001) 134673131-134673512 processed_pseudogene
ENSG00000272456 (CTD-2342N23.3)
 ENST00000606279 (CTD-2342N23.3-001) 134722947-134723949 lincRNA
ENSG00000278898 (CTD-2342N23.1)
 ENST00000623046 (CTD-2342N23.1-001) 134764809-134767276 TEC
ENSG00000279518 (AC083843.4)
 ENST00000623679 (AC083843.4-001) 134783694-134785879 TEC

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0004PU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022335-ENSMUSG00000022332 CGP 10090 15:68083766-69093512
GeneTranscriptPositionBiotype
ENSMUSG00000022332 (Khdrbs3)
KH domain containing, RNA binding, signal transduction associated 3 		ENSMUST00000022954 (Khdrbs3-201) 68928420-69093512 protein_coding
ENSMUSG00000065476 (Mir30b)
microRNA 30b 		ENSMUST00000083542 (Mir30b-201) 68337415-68337510 miRNA
ENSMUSG00000068397 (Gm10240)
predicted gene 10240 		ENSMUST00000089785 (Gm10240-001) 68309819-68310301 processed_pseudogene
ENSMUSG00000069996 (Gm7125)
predicted pseudogene 7125 		ENSMUST00000093430 (Gm7125-201) 68876790-68877062 processed_pseudogene
ENSMUSG00000093387 (Gm20732)
predicted gene 20732 		ENSMUST00000175699 (Gm20732-001) 68340983-68363176 lincRNA
ENSMUSG00000096967 (Gm26621)
predicted gene, 26621 		ENSMUST00000180413 (Gm26621-002) 68335136-68337410 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004PU_0001ENSG00000066827ENST00000377838ENST00000429442ENST00000517307ENST00000518191ENST00000518408ENST00000519827ENST00000520214ENST00000520356ENST00000520727ENST00000521673ENST00000522257ENST00000522723ENST00000522974ENST00000523040ENST00000523243ENST00000523399ENST00000523924ENSG00000131773ENST00000355849ENST00000517394ENST00000517859ENST00000518728ENST00000519600ENST00000520981ENST00000521461ENST00000522079ENST00000522433ENST00000522578ENST00000524199ENST00000524282ENSG00000207582ENST00000384850ENSG00000248492ENST00000505776ENSG00000251218ENST00000505083ENSG00000253433ENST00000519500ENSG00000253915ENST00000522077ENSG00000254028ENST00000521444ENSG00000254372ENST00000518674ENSG00000259820ENST00000568248ENSG00000271048ENST00000605856ENSG00000272456ENST00000606279ENSG00000278898ENST00000623046ENSG00000279518ENST00000623679CIL_0004PU_0002ENSMUSG00000022332ENSMUST00000022954ENSMUSG00000065476ENSMUST00000083542ENSMUSG00000068397ENSMUST00000089785ENSMUSG00000069996ENSMUST00000093430ENSMUSG00000093387ENSMUST00000175699ENSMUSG00000096967ENSMUST00000180413
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004PU_0001ENSG00000066827ENST00000377838ENST00000429442ENST00000517307ENST00000518408ENST00000520214ENST00000520727ENST00000521673ENST00000522257ENST00000522974ENST00000523243ENST00000523399ENST00000523924ENSG00000131773ENST00000355849ENST00000517859ENST00000519600ENST00000522433ENST00000522578ENST00000524199ENST00000524282ENSG00000207582ENST00000384850ENSG00000248492ENST00000505776ENSG00000251218ENST00000505083ENSG00000253433ENST00000519500ENSG00000253915ENST00000522077ENSG00000254028ENST00000521444ENSG00000254372ENST00000518674ENSG00000259820ENST00000568248ENSG00000271048ENST00000605856ENSG00000272456ENST00000606279ENSG00000278898ENST00000623046ENSG00000279518ENST00000623679CIL_0004PU_0002ENSMUSG00000022332ENSMUST00000022954ENSMUSG00000065476ENSMUST00000083542ENSMUSG00000068397ENSMUST00000089785ENSMUSG00000069996ENSMUST00000093430ENSMUSG00000093387ENSMUST00000175699ENSMUSG00000096967ENSMUST00000180413
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000066827 ENST00000377838 N/A N/A N/A 0.668±0.00 0.811±0.00 0.355±0.00 0.859±0.00 N/A N/A N/A 0.459±0.00 0.602±0.45 12.247±0.00 1.714±0.00
ENST00000429442 N/A N/A 1.131±0.00 N/A N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A 5.038±0.00 N/A
ENST00000517307 N/A N/A N/A N/A N/A N/A N/A 0.877±0.00 N/A N/A N/A N/A N/A N/A
ENST00000518191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518408 N/A 1.448±0.00 N/A 1.136±0.00 8.611±0.00 N/A 0.567±0.00 0.459±0.00 0.565±0.00 N/A 1.731±1.03 1.712±0.69 30.761±10.40 5.409±1.30
ENST00000519827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520214 0.347±0.00 N/A N/A N/A N/A N/A N/A N/A 0.524±0.00 N/A N/A N/A 12.729±4.36 N/A
ENST00000520356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520727 N/A 1.085±0.00 N/A N/A 0.921±0.00 0.820±0.00 N/A N/A 0.121±0.00 N/A 0.872±0.00 N/A N/A N/A
ENST00000521673 N/A 3.398±0.00 N/A N/A 8.904±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522257 N/A N/A 8.959±0.00 1.399±0.00 N/A 2.142±0.00 0.869±0.00 N/A N/A N/A 1.844±0.00 2.052±0.00 N/A N/A
ENST00000522723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522974 N/A N/A 0.889±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A
ENST00000523040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.171±0.00 N/A 0.906±0.00
ENST00000523399 0.304±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.421±0.00 N/A 0.902±0.00 23.635±0.00 2.866±0.00
ENST00000523924 N/A N/A N/A 0.806±0.00 N/A 0.960±0.00 0.403±0.00 1.821±0.00 N/A 0.561±0.00 N/A N/A N/A 0.902±0.00
ENSG00000131773 ENST00000355849 2.670±0.00 1.752±0.00 1.415±0.00 10.679±1.25 1.393±0.42 3.116±2.25 1.684±1.22 6.625±5.98 3.802±1.03 2.755±0.00 6.050±3.53 3.044±1.97 1.095±0.44 37.387±8.38
ENST00000517394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517859 N/A 1.524±0.00 N/A 11.462±0.00 1.221±0.27 2.637±0.67 N/A N/A N/A 0.701±0.00 3.829±0.00 N/A N/A N/A
ENST00000518728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519600 N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A 0.106±0.00 N/A 0.076±0.00 N/A N/A
ENST00000520981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522433 N/A 3.173±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 5.492±0.00 5.559±0.00 2.511±1.49 283.922±0.00
ENST00000522578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.562±0.00 N/A N/A
ENST00000524199 2.819±0.00 N/A N/A N/A N/A N/A 2.106±0.00 N/A N/A N/A N/A 2.124±0.00 0.349±0.00 46.678±3.95
ENST00000524282 3.600±0.00 2.808±0.00 3.430±0.00 26.418±0.00 4.792±0.00 4.924±3.66 0.919±0.00 1.472±0.00 2.890±0.00 3.701±0.00 N/A 1.527±0.00 1.414±0.89 N/A
ENSG00000207582 ENST00000384850 N/A N/A N/A N/A N/A N/A 0.221±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000248492 ENST00000505776 N/A N/A N/A N/A N/A N/A N/A 1.024±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000251218 ENST00000505083 N/A N/A 0.027±0.00 N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.014±0.00 N/A 0.024±0.01
ENSG00000253433 ENST00000519500 N/A N/A N/A 0.131±0.00 N/A N/A 0.082±0.00 0.153±0.00 N/A N/A N/A 0.081±0.00 N/A 0.756±0.14
ENSG00000253915 ENST00000522077 N/A 0.119±0.00 0.695±0.00 N/A N/A N/A N/A N/A 0.266±0.00 0.258±0.05 N/A N/A N/A 0.256±0.12
ENSG00000254028 ENST00000521444 N/A N/A 0.187±0.00 0.484±0.00 0.170±0.06 N/A 0.023±0.01 0.104±0.02 0.372±0.34 1.132±0.00 N/A 0.047±0.01 N/A 0.708±0.09
ENSG00000254372 ENST00000518674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.033±0.00
ENSG00000259820 ENST00000568248 0.336±0.00 0.354±0.00 N/A 0.342±0.18 0.849±0.38 0.854±0.70 1.451±0.00 1.119±0.00 0.632±0.29 0.171±0.00 0.480±0.30 1.692±1.35 0.496±0.25 0.890±0.56
ENSG00000271048 ENST00000605856 N/A N/A 0.236±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.01 N/A
ENSG00000272456 ENST00000606279 N/A 0.037±0.00 N/A 0.020±0.00 0.145±0.00 N/A 0.017±0.00 0.197±0.03 1.508±0.00 0.090±0.00 N/A 0.026±0.00 0.052±0.00 0.280±0.18
ENSG00000278898 ENST00000623046 N/A N/A N/A 0.039±0.04 N/A N/A 0.037±0.00 2.532±2.42 0.039±0.00 N/A N/A N/A 0.042±0.01 0.010±0.00
ENSG00000279518 ENST00000623679 0.045±0.00 0.259±0.00 0.565±0.00 0.133±0.04 0.126±0.01 0.134±0.09 0.574±0.48 1.102±0.81 0.180±0.11 0.197±0.14 0.191±0.00 0.220±0.15 0.150±0.04 0.182±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022332 ENSMUST00000022954 5.410±2.29 10.323±4.40 16.583±0.50 52.574±6.33 2.911±0.92 7.342±3.08 12.300±4.51 7.410±2.31 4.697±2.08 5.112±2.52 5.313±1.27 18.297±5.34 1.980±0.42 18.510±6.52
ENSMUSG00000065476 ENSMUST00000083542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 594.864±0.00 N/A
ENSMUSG00000068397 ENSMUST00000089785 N/A N/A 3.590±0.00 2.057±0.00 N/A N/A N/A N/A 6.491±1.19 N/A N/A N/A N/A N/A
ENSMUSG00000069996 ENSMUST00000093430 0.567±0.00 N/A 0.078±0.00 0.891±0.00 1.435±0.00 N/A N/A 0.341±0.01 N/A 0.660±0.00 N/A 0.461±0.25 16.238±5.85 1.718±0.00
ENSMUSG00000093387 ENSMUST00000175699 0.380±0.05 0.076±0.02 N/A N/A 0.338±0.00 0.120±0.07 0.314±0.08 0.266±0.09 0.107±0.05 0.176±0.00 N/A 0.078±0.00 0.593±0.18 0.316±0.15
ENSMUSG00000096967 ENSMUST00000180413 0.212±0.09 N/A N/A 0.401±0.00 0.135±0.01 0.737±0.35 0.358±0.03 0.408±0.17 0.561±0.29 0.790±0.00 0.159±0.07 1.063±0.00 N/A 1.053±0.53

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