C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: G-rich RNA sequence binding factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132463 GRSF1 9606 - 4:70815782-70839945 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254799 GRSF1-001 70815782-70839945 protein_coding
  ENST00000499044 GRSF1-004 70819758-70839503 protein_coding
  ENST00000502323 GRSF1-006 70820312-70839001 protein_coding
  ENST00000505068 GRSF1-002 70819531-70839897 retained_intron
  ENST00000506453 GRSF1-017 70820699-70833217 nonsense_mediated_decay
  ENST00000508091 GRSF1-016 70820746-70839373 processed_transcript
  ENST00000514161 GRSF1-005 70820375-70839343 protein_coding
  ENST00000545193 GRSF1-201 70819533-70839880 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254799ENST00000499044ENST00000502323ENST00000505068ENST00000506453ENST00000514161ENST00000545193
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254799 0.927±0.00 1.232±0.00 0.626±0.00 4.866±0.93 1.562±0.00 1.901±0.37 2.043±0.64 1.381±0.58 0.797±0.01 1.427±0.87 2.478±0.27 1.523±0.21 0.987±0.06 2.156±0.00
ENST00000499044 3.032±0.00 3.894±0.00 N/A 8.932±1.31 3.275±0.00 N/A 1.796±0.00 N/A N/A N/A N/A 3.561±0.00 N/A 4.444±0.00
ENST00000502323 N/A N/A N/A N/A N/A 3.081±0.00 N/A 2.467±0.00 2.339±0.00 N/A 4.238±1.42 N/A N/A N/A
ENST00000505068 N/A 2.198±0.00 1.474±0.00 N/A N/A N/A 1.035±0.00 N/A N/A 2.494±0.00 N/A 3.026±1.64 N/A 3.406±0.00
ENST00000506453 6.155±0.00 10.070±0.00 N/A N/A 11.830±0.00 11.471±0.00 20.395±0.00 11.073±0.00 11.483±0.00 13.303±0.00 25.243±0.00 15.446±1.31 13.497±6.91 9.349±0.00
ENST00000514161 5.695±0.00 N/A N/A N/A 3.979±0.00 4.635±0.00 3.817±0.00 N/A 4.513±0.00 N/A N/A 8.934±2.93 15.829±11.36 4.247±0.00
ENST00000545193 4.393±0.00 4.437±0.00 3.009±0.00 19.661±0.00 6.579±4.89 7.753±3.53 16.928±0.00 9.347±7.38 4.810±3.10 4.881±0.98 8.649±3.61 8.890±3.03 9.722±0.19 15.489±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LT CIL_0005LT_0002 CGP 4:70704204-70839945
CIL_00051M CIL_00051M_0002 CGP 4:70815782-71022449

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0003729 TAS mRNA binding
GO:0005737 TAS cytoplasm
GO:0005739 IDA mitochondrion
GO:0006378 TAS mRNA polyadenylation
GO:0008033 IEA tRNA processing
GO:0009952 IEA anterior/posterior pattern specification
GO:0016331 IEA morphogenesis of embryonic epithelium
GO:0042645 IEA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053021 grsf1 G-rich RNA sequence binding factor 1 protein_coding Danio_rerio
ENSMUSG00000044221 Grsf1 G-rich RNA sequence binding factor 1 protein_coding Mus_musculus

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