C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: G-rich RNA sequence binding factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044221 Grsf1 10090 - 5:88659448-88676171 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000078945 Grsf1-001 88659448-88676171 protein_coding
  ENSMUST00000113234 Grsf1-002 88659458-88675666 protein_coding
  ENSMUST00000130408 Grsf1-007 88662535-88671405 retained_intron
  ENSMUST00000133532 Grsf1-006 88671207-88675192 protein_coding
  ENSMUST00000137725 Grsf1-005 88673708-88675199 processed_transcript
  ENSMUST00000150438 Grsf1-004 88672643-88675242 protein_coding
  ENSMUST00000153565 Grsf1-003 88665884-88675670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078945ENSMUST00000113234ENSMUST00000130408ENSMUST00000153565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078945 17.520±4.88 103.999±21.53 17.133±4.95 16.761±4.31 20.261±8.45 30.209±2.54 18.646±6.56 38.313±7.64 20.115±6.46 17.336±2.85 21.504±3.23 48.937±19.63 14.710±6.59 5.277±1.13
ENSMUST00000113234 N/A N/A 2.862±0.00 8.027±0.97 N/A N/A 12.599±1.31 5.624±0.00 2.927±0.47 N/A 7.184±2.84 33.800±1.04 15.953±6.23 3.525±2.50
ENSMUST00000130408 N/A N/A N/A 24.937±0.00 N/A N/A N/A N/A N/A N/A N/A 31.267±0.00 37.895±0.96 14.565±0.00
ENSMUST00000153565 N/A N/A N/A 100.855±0.00 N/A N/A N/A N/A N/A N/A N/A 142.286±0.00 92.662±33.22 39.914±55.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LT CIL_0005LT_0003 CGP 5:88583574-88676171
CIL_00051M CIL_00051M_0003 CGP 5:88659448-88762058

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005739 IDA mitochondrion
GO:0006397 IEA mRNA processing
GO:0008033 IEA tRNA processing
GO:0009952 IMP anterior/posterior pattern specification
GO:0016331 IMP morphogenesis of embryonic epithelium
GO:0042645 IEA mitochondrial nucleoid
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053021 grsf1 G-rich RNA sequence binding factor 1 protein_coding Danio_rerio
ENSG00000132463 GRSF1 G-rich RNA sequence binding factor 1 protein_coding Homo_sapiens

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