C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G-rich RNA sequence binding factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254799 GRSF1-001 ENSG00000132463 9606 - 4:70815782-70839945 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254799
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254799 0.927±0.00 1.232±0.00 0.626±0.00 4.866±0.93 1.562±0.00 1.901±0.37 2.043±0.64 1.381±0.58 0.797±0.01 1.427±0.87 2.478±0.27 1.523±0.21 0.987±0.06 2.156±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LT CIL_0005LT_0002 CGP 4:70704204-70839945
CIL_00051M CIL_00051M_0002 CGP 4:70815782-71022449

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0003729 TAS mRNA binding
GO:0005737 TAS cytoplasm
GO:0005739 IDA mitochondrion
GO:0006378 TAS mRNA polyadenylation
GO:0008033 IEA tRNA processing
GO:0009952 IEA anterior/posterior pattern specification
GO:0016331 IEA morphogenesis of embryonic epithelium
GO:0042645 IEA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078945 Grsf1-001 protein_coding Mus_musculus 0 1807
ENSMUST00000113234 Grsf1-002 protein_coding Mus_musculus 0 1452
ENSMUST00000130408 Grsf1-007 retained_intron Mus_musculus 0 1002
ENSMUST00000153565 Grsf1-003 protein_coding Mus_musculus 0 809

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