C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB25, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132698 RAB25 9606 + 1:156061160-156070514 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361084 RAB25-001 156061160-156070514 protein_coding
  ENST00000463614 RAB25-002 156061189-156066282 processed_transcript
  ENST00000473336 RAB25-003 156061383-156070504 processed_transcript
  ENST00000487325 RAB25-005 156061206-156070106 processed_transcript
  ENST00000497968 RAB25-004 156068212-156070365 processed_transcript
  ENST00000615862 RAB25-201 156061191-156070457 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000361084ENST00000463614ENST00000473336ENST00000487325ENST00000497968ENST00000615862
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000361084 N/A N/A 0.327±0.00 N/A 4.841±0.00 3.105±0.75 N/A 7.556±0.00 1.049±0.00 3.060±0.55 11.127±6.74 18.375±11.40 0.348±0.00
ENST00000463614 N/A N/A N/A N/A N/A 5.677±0.00 N/A N/A N/A 0.744±0.00 7.851±0.00 N/A N/A
ENST00000473336 N/A 0.406±0.00 N/A 0.165±0.00 N/A 5.120±0.00 N/A N/A N/A N/A 35.300±14.87 N/A N/A
ENST00000487325 N/A N/A N/A N/A N/A N/A 0.245±0.00 N/A N/A N/A N/A N/A N/A
ENST00000497968 N/A N/A N/A N/A 6.508±0.00 N/A N/A 0.261±0.00 N/A N/A 57.457±0.00 3.908±0.00 0.871±0.52
ENST00000615862 0.633±0.00 N/A N/A N/A 2.684±1.59 5.484±1.42 N/A 16.261±0.00 0.676±0.09 22.619±0.00 39.701±46.79 8.123±0.00 1.657±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008284 IDA positive regulation of cell proliferation
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0031143 IDA pseudopodium
GO:0031268 IDA pseudopodium organization
GO:0031410 IDA cytoplasmic vesicle
GO:0031489 IPI myosin V binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058800 rab25a RAB25, member RAS oncogene family a protein_coding Danio_rerio
ENSMUSG00000008601 Rab25 RAB25, member RAS oncogene family protein_coding Mus_musculus

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