C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB25, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000008601 Rab25 10090 - 3:88542029-88548300 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000008745 Rab25-001 88542029-88548300 protein_coding
  ENSMUST00000131775 Rab25-002 88542309-88548249 protein_coding
  ENSMUST00000141371 Rab25-004 88542676-88543514 retained_intron
  ENSMUST00000149724 Rab25-003 88544642-88548282 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008745ENSMUST00000131775ENSMUST00000141371ENSMUST00000149724
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008745 7.743±7.62 0.080±0.02 65.347±12.99 0.665±0.31 16.679±4.54 213.471±8.91 0.891±0.01 21.967±1.10 0.168±0.07 37.891±9.34 0.156±0.07 16.910±6.10 1.620±0.52 0.667±0.43
ENSMUST00000131775 N/A 0.090±0.00 N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A 0.110±0.00 4.208±0.46 0.316±0.00 N/A
ENSMUST00000141371 N/A N/A N/A 0.268±0.00 N/A N/A N/A N/A 0.268±0.00 N/A N/A 9.826±0.00 3.152±1.44 N/A
ENSMUST00000149724 0.040±0.00 0.080±0.01 N/A 0.146±0.00 1.434±0.00 N/A N/A N/A 0.043±0.02 N/A 0.119±0.00 N/A N/A 0.047±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008284 ISS positive regulation of cell proliferation
GO:0015031 IEA protein transport
GO:0031143 ISS pseudopodium
GO:0031268 ISS pseudopodium organization
GO:0031410 ISS cytoplasmic vesicle
GO:0031489 IEA myosin V binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058800 rab25a RAB25, member RAS oncogene family a protein_coding Danio_rerio
ENSG00000132698 RAB25 RAB25, member RAS oncogene family protein_coding Homo_sapiens

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