C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SCO1 cytochrome c oxidase assembly protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133028 SCO1 9606 - 17:10672474-10698375 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000255390 SCO1-001 10672474-10697568 protein_coding
  ENST00000577335 SCO1-006 10692783-10697532 nonsense_mediated_decay
  ENST00000577427 SCO1-002 10680354-10697530 protein_coding
  ENST00000579396 SCO1-004 10695562-10697527 retained_intron
  ENST00000582053 SCO1-003 10692924-10698375 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000255390ENST00000577335ENST00000577427
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000255390 1.197±0.00 2.025±0.00 0.678±0.00 1.312±0.30 1.210±0.44 1.433±0.36 1.065±0.69 2.083±0.28 1.775±0.00 0.425±0.24 0.885±0.41 0.951±0.63 1.316±0.31 1.082±0.41
ENST00000577335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.907±0.00 7.787±0.00
ENST00000577427 6.023±0.00 4.893±0.00 4.903±0.00 5.564±0.08 4.661±1.69 5.648±0.98 5.860±2.46 6.754±1.18 4.762±0.28 3.543±1.29 3.093±1.19 4.865±1.49 9.119±1.73 5.299±0.47

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005507 IEA copper ion binding
GO:0005739 TAS mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0006091 TAS generation of precursor metabolites and energy
GO:0006825 IEA copper ion transport
GO:0006878 IEA cellular copper ion homeostasis
GO:0008535 IEA respiratory chain complex IV assembly
GO:0016209 IEA antioxidant activity
GO:0016491 IEA oxidoreductase activity
GO:0030016 IDA myofibril
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067593 SCO1 SCO1 cytochrome c oxidase assembly protein protein_coding Danio_rerio
ENSMUSG00000069844 Sco1 SCO cytochrome oxidase deficient homolog 1 (yeast) protein_coding Mus_musculus

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