C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133401 PDZD2 9606 + 5:31639410-32110931 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000397559 PDZD2-007 32100867-32108771 processed_transcript
  ENST00000438447 PDZD2-001 31639410-32110931 protein_coding
  ENST00000502489 PDZD2-004 31854937-32077955 retained_intron
  ENST00000502824 PDZD2-003 31692887-31843975 processed_transcript
  ENST00000503961 PDZD2-013 32077460-32083615 processed_transcript
  ENST00000509256 PDZD2-011 32052494-32057949 retained_intron
  ENST00000510285 PDZD2-008 32107321-32108461 processed_transcript
  ENST00000513184 PDZD2-012 32059332-32072317 processed_transcript
  ENST00000513490 PDZD2-006 32099174-32110926 processed_transcript
  ENST00000513852 PDZD2-010 31936152-31983541 processed_transcript
  ENST00000513910 PDZD2-009 31712039-31799289 protein_coding
  ENST00000515115 PDZD2-014 32098597-32108365 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000397559ENST00000438447ENST00000502489ENST00000510285ENST00000513490ENST00000515115
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000397559 N/A N/A N/A N/A N/A N/A N/A 2.119±0.00 N/A N/A N/A
ENST00000438447 N/A 1.923±0.00 2.561±0.24 0.632±0.00 5.107±3.02 0.374±0.00 0.247±0.00 N/A 2.186±1.71 N/A N/A
ENST00000502489 N/A 1.634±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510285 N/A N/A N/A N/A N/A 0.825±0.00 N/A N/A N/A N/A N/A
ENST00000513490 0.269±0.00 N/A N/A 0.538±0.00 N/A 0.317±0.00 0.045±0.00 0.083±0.00 1.191±0.00 N/A N/A
ENST00000515115 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.284±0.00 19.663±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00021E CIL_00021E_0002 CGP 5:31639410-32174350

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 ISS extracellular region
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0005911 ISS cell-cell junction
GO:0007155 IEA cell adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059801 pdzd2 PDZ domain containing 2 protein_coding Danio_rerio
ENSMUSG00000022197 Pdzd2 PDZ domain containing 2 protein_coding Mus_musculus

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