C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438447 PDZD2-001 ENSG00000133401 9606 + 5:31639410-32110931 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverOvaryENST00000438447
Transcript ID Bladder Brain Colon Heart Kidney Liver Ovary
ENST00000438447 1.923±0.00 2.561±0.24 0.632±0.00 5.107±3.02 0.374±0.00 0.247±0.00 2.186±1.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00021E CIL_00021E_0002 CGP 5:31639410-32174350

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 ISS extracellular region
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0005911 ISS cell-cell junction
GO:0007155 IEA cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075317 Pdzd2-004 protein_coding Mus_musculus 0 3245
ENSMUST00000189469 Pdzd2-007 retained_intron Mus_musculus 0 1522
ENSMUST00000190929 Pdzd2-002 protein_coding Mus_musculus 0 905
ENSMUST00000189746 Pdzd2-005 processed_transcript Mus_musculus 0 797
ENSMUST00000191339 Pdzd2-006 retained_intron Mus_musculus 0 438

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