C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWAP switching B-cell complex 70kDa subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133789 SWAP70 9606 + 11:9664077-9752991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318950 SWAP70-001 9664077-9752991 protein_coding
  ENST00000447399 SWAP70-002 9664077-9751821 protein_coding
  ENST00000524817 SWAP70-003 9664135-9741953 retained_intron
  ENST00000526358 SWAP70-004 9664081-9728071 nonsense_mediated_decay
  ENST00000531814 SWAP70-005 9664102-9725055 retained_intron
  ENST00000534562 SWAP70-007 9726895-9750491 nonsense_mediated_decay
  ENST00000534662 SWAP70-006 9720066-9738259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318950ENST00000447399ENST00000524817ENST00000534562ENST00000534662
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318950 18.139±0.00 10.896±0.00 2.091±0.00 2.094±0.72 7.039±1.24 10.277±7.02 2.942±1.90 6.134±0.00 2.690±2.24 9.576±3.84 2.832±0.00 5.303±1.29 11.676±1.15 4.637±2.92
ENST00000447399 19.073±0.00 8.737±0.00 1.342±0.00 5.947±0.00 6.000±0.00 4.130±3.36 1.953±1.38 3.129±2.33 2.216±0.00 6.128±4.06 1.507±0.95 5.464±4.63 11.489±11.30 2.862±0.12
ENST00000524817 N/A N/A N/A 0.715±0.00 2.957±0.00 1.084±0.00 0.576±0.00 N/A 1.705±0.00 2.466±0.00 N/A 1.313±0.00 N/A N/A
ENST00000534562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.599±0.00 N/A N/A N/A
ENST00000534662 N/A N/A N/A N/A 6.275±0.00 N/A N/A N/A N/A N/A 0.606±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0001 VISTA 11:9311967-9915183
CIL_0004J5 CIL_0004J5_0001 CGP 11:9573681-9752991
CIL_0004J8 CIL_0004J8_0001 CGP 11:9664077-10294207

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0016444 IEA somatic cell DNA recombination
GO:0042995 IEA cell projection
GO:0045190 IEA isotype switching

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051819 swap70a SWAP switching B-cell complex subunit 70a protein_coding Danio_rerio
ENSDARG00000057286 swap70b SWAP switching B-cell complex subunit 70b protein_coding Danio_rerio
ENSMUSG00000031015 Swap70 SWA-70 protein protein_coding Mus_musculus

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