C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004J5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166483-ENSG00000133789 CGP 9606 11:9573681-9752991
GeneTranscriptPositionBiotype
ENSG00000133789 (SWAP70)
SWAP switching B-cell complex 70kDa subunit 		ENST00000318950 (SWAP70-001) 9664077-9752991 protein_coding
ENST00000447399 (SWAP70-002) 9664077-9751821 protein_coding
ENST00000524817 (SWAP70-003) 9664135-9741953 retained_intron
ENST00000526358 (SWAP70-004) 9664081-9728071 nonsense_mediated_decay
ENST00000531814 (SWAP70-005) 9664102-9725055 retained_intron
ENST00000534562 (SWAP70-007) 9726895-9750491 nonsense_mediated_decay
ENST00000534662 (SWAP70-006) 9720066-9738259 protein_coding
ENSG00000166483 (WEE1)
WEE1 G2 checkpoint kinase 		ENST00000299613 (WEE1-002) 9574687-9589984 protein_coding
ENST00000450114 (WEE1-001) 9573681-9589207 protein_coding
ENST00000524549 (WEE1-003) 9575490-9581487 retained_intron
ENST00000524612 (WEE1-004) 9577785-9586581 protein_coding
ENST00000527848 (WEE1-008) 9586714-9593457 protein_coding
ENST00000530175 (WEE1-007) 9581544-9588701 nonsense_mediated_decay
ENST00000530712 (WEE1-005) 9581227-9588487 protein_coding
ENST00000532275 (WEE1-006) 9585183-9588456 retained_intron
ENSG00000201564 (RN7SKP50)
RNA, 7SK small nuclear pseudogene 50 		ENST00000364694 (RN7SKP50-201) 9680924-9681238 misc_RNA
ENSG00000239470 (RP11-16F15.2)
 ENST00000472300 (RP11-16F15.2-001) 9660438-9660920 processed_pseudogene
ENSG00000243964 (RP11-16F15.1)
 ENST00000475608 (RP11-16F15.1-001) 9606142-9606609 processed_pseudogene
ENSG00000255463 (RP11-16F15.4)
 ENST00000527568 (RP11-16F15.4-001) 9631008-9631359 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004J5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031016-ENSMUSG00000031015 CGP 10090 7:110122350-110283503
GeneTranscriptPositionBiotype
ENSMUSG00000031015 (Swap70)
SWA-70 protein 		ENSMUST00000033325 (Swap70-201) 110221703-110283503 protein_coding
ENSMUSG00000031016 (Wee1)
WEE 1 homolog 1 (S. pombe) 		ENSMUST00000033326 (Wee1-201) 110122350-110142112 protein_coding
ENSMUSG00000101585 (RP24-272D15.1)
RIKEN cDNA 1600010M07 gene 		ENSMUST00000185931 (RP24-272D15.1-002) 109998412-110151202 lincRNA
ENSMUST00000188662 (RP24-272D15.1-004) 109998404-109999233 lincRNA
ENSMUST00000188824 (RP24-272D15.1-003) 110001140-110006631 lincRNA
ENSMUST00000191157 (RP24-272D15.1-001) 109998376-110006646 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004J5_0001ENSG00000133789ENST00000318950ENST00000447399ENST00000524817ENST00000526358ENST00000531814ENST00000534562ENST00000534662ENSG00000166483ENST00000299613ENST00000450114ENST00000524549ENST00000524612ENST00000527848ENST00000530175ENST00000530712ENST00000532275ENSG00000201564ENST00000364694ENSG00000239470ENST00000472300ENSG00000243964ENST00000475608ENSG00000255463ENST00000527568CIL_0004J5_0002ENSMUSG00000031015ENSMUST00000033325ENSMUSG00000031016ENSMUST00000033326ENSMUSG00000101585ENSMUST00000185931ENSMUST00000188662ENSMUST00000188824ENSMUST00000191157
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004J5_0001ENSG00000133789ENST00000318950ENST00000447399ENST00000524817ENST00000534562ENST00000534662ENSG00000166483ENST00000299613ENST00000450114ENST00000524549ENST00000524612ENST00000530175ENST00000530712ENSG00000201564ENST00000364694ENSG00000239470ENST00000472300ENSG00000243964ENST00000475608ENSG00000255463ENST00000527568CIL_0004J5_0002ENSMUSG00000031015ENSMUST00000033325ENSMUSG00000031016ENSMUST00000033326ENSMUSG00000101585ENSMUST00000185931ENSMUST00000188662ENSMUST00000188824ENSMUST00000191157
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000133789 ENST00000318950 18.139±0.00 10.896±0.00 2.091±0.00 2.094±0.72 7.039±1.24 10.277±7.02 2.942±1.90 6.134±0.00 2.690±2.24 9.576±3.84 2.832±0.00 5.303±1.29 11.676±1.15 4.637±2.92
ENST00000447399 19.073±0.00 8.737±0.00 1.342±0.00 5.947±0.00 6.000±0.00 4.130±3.36 1.953±1.38 3.129±2.33 2.216±0.00 6.128±4.06 1.507±0.95 5.464±4.63 11.489±11.30 2.862±0.12
ENST00000524817 N/A N/A N/A 0.715±0.00 2.957±0.00 1.084±0.00 0.576±0.00 N/A 1.705±0.00 2.466±0.00 N/A 1.313±0.00 N/A N/A
ENST00000526358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.599±0.00 N/A N/A N/A
ENST00000534662 N/A N/A N/A N/A 6.275±0.00 N/A N/A N/A N/A N/A 0.606±0.00 N/A N/A N/A
ENSG00000166483 ENST00000299613 0.809±0.00 N/A 1.101±0.00 0.457±0.00 2.166±0.00 0.984±0.00 N/A 1.032±0.00 N/A N/A N/A 7.188±4.01 7.468±0.00 4.307±0.05
ENST00000450114 4.275±0.00 2.788±0.00 N/A 0.582±0.00 2.269±0.63 2.038±0.00 6.341±4.86 1.330±0.12 2.706±0.00 3.421±0.00 1.796±0.56 9.645±6.79 12.844±3.62 15.657±5.35
ENST00000524549 N/A N/A 1.705±0.00 0.053±0.00 2.677±0.00 1.021±0.00 0.400±0.00 0.440±0.00 2.142±0.00 1.157±0.00 0.101±0.00 2.860±1.34 N/A N/A
ENST00000524612 N/A N/A N/A 0.142±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530175 N/A N/A N/A 0.613±0.41 N/A 5.421±0.00 1.648±0.00 3.203±0.00 N/A N/A N/A 12.226±0.00 N/A N/A
ENST00000530712 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.106±0.00 N/A N/A N/A N/A
ENST00000532275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201564 ENST00000364694 N/A 0.567±0.00 N/A N/A 0.242±0.00 N/A 0.229±0.00 0.507±0.00 N/A 2.471±0.00 N/A 0.915±0.53 N/A N/A
ENSG00000239470 ENST00000472300 0.141±0.00 0.557±0.00 N/A 0.119±0.00 0.205±0.11 0.136±0.00 0.056±0.00 0.235±0.00 0.027±0.00 0.055±0.00 0.479±0.00 0.267±0.28 0.469±0.20 0.206±0.16
ENSG00000243964 ENST00000475608 0.215±0.00 0.502±0.00 N/A 0.088±0.01 0.436±0.00 0.295±0.00 0.035±0.00 0.118±0.00 0.035±0.00 0.153±0.00 0.269±0.00 0.245±0.15 0.158±0.00 0.102±0.00
ENSG00000255463 ENST00000527568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031015 ENSMUST00000033325 7.723±3.39 8.007±0.32 6.640±0.52 2.007±0.40 17.220±9.72 8.049±3.16 2.610±1.14 5.219±2.00 2.871±1.59 26.301±1.89 1.783±0.63 11.303±3.06 4.375±2.40 1.268±0.20
ENSMUSG00000031016 ENSMUST00000033326 N/A 4.516±0.83 N/A 2.981±1.98 1.752±0.76 4.111±0.29 N/A N/A 1.694±1.69 N/A 0.590±0.01 5.418±0.68 11.564±4.90 7.065±5.20
ENSMUSG00000101585 ENSMUST00000185931 0.258±0.06 0.231±0.00 N/A 0.028±0.00 0.255±0.03 0.137±0.04 0.154±0.07 0.123±0.07 N/A 0.091±0.00 N/A 0.534±0.84 0.655±0.44 1.869±2.80
ENSMUST00000188662 0.142±0.00 N/A 0.121±0.00 N/A 1.454±0.00 N/A N/A N/A N/A N/A 0.076±0.00 0.090±0.00 N/A N/A
ENSMUST00000188824 N/A N/A N/A N/A 0.639±0.00 N/A N/A N/A N/A 0.251±0.00 N/A N/A 0.292±0.00 N/A
ENSMUST00000191157 0.928±0.33 0.265±0.11 0.639±0.36 0.043±0.03 1.076±0.36 0.139±0.03 0.103±0.00 0.234±0.00 0.559±0.52 0.733±0.27 0.195±0.02 0.427±0.17 0.237±0.24 N/A

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