C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004J8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000133789-ENSG00000133812 CGP 9606 11:9664077-10294207
GeneTranscriptPositionBiotype
ENSG00000133789 (SWAP70)
SWAP switching B-cell complex 70kDa subunit 		ENST00000318950 (SWAP70-001) 9664077-9752991 protein_coding
ENST00000447399 (SWAP70-002) 9664077-9751821 protein_coding
ENST00000524817 (SWAP70-003) 9664135-9741953 retained_intron
ENST00000526358 (SWAP70-004) 9664081-9728071 nonsense_mediated_decay
ENST00000531814 (SWAP70-005) 9664102-9725055 retained_intron
ENST00000534562 (SWAP70-007) 9726895-9750491 nonsense_mediated_decay
ENST00000534662 (SWAP70-006) 9720066-9738259 protein_coding
ENSG00000133812 (SBF2)
SET binding factor 2 		ENST00000256190 (SBF2-001) 9778667-10294207 protein_coding
ENST00000420722 (SBF2-008) 9853707-9993104 protein_coding
ENST00000524961 (SBF2-011) 9812586-9819505 processed_transcript
ENST00000525040 (SBF2-006) 9779154-9787973 retained_intron
ENST00000525697 (SBF2-013) 9808574-9810472 processed_transcript
ENST00000526353 (SBF2-004) 9956568-9968356 retained_intron
ENST00000527019 (SBF2-007) 9993012-10044606 processed_transcript
ENST00000528478 (SBF2-012) 9795914-9812754 retained_intron
ENST00000529587 (SBF2-014) 9781548-9785349 retained_intron
ENST00000530741 (SBF2-009) 9808912-9839603 protein_coding
ENST00000532095 (SBF2-015) 9784933-9789204 protein_coding
ENST00000533584 (SBF2-010) 9812635-9829668 retained_intron
ENST00000533661 (SBF2-003) 10016468-10042990 retained_intron
ENST00000533770 (SBF2-002) 9838039-10193957 retained_intron
ENST00000617179 (SBF2-201) 9778667-10042981 protein_coding
ENSG00000201564 (RN7SKP50)
RNA, 7SK small nuclear pseudogene 50 		ENST00000364694 (RN7SKP50-201) 9680924-9681238 misc_RNA
ENSG00000245522 (RP11-540A21.2)
 ENST00000500698 (RP11-540A21.2-001) 9754770-9759533 lincRNA
ENST00000525154 (RP11-540A21.2-002) 9755129-9758164 lincRNA
ENSG00000252568 (RNU7-28P)
RNA, U7 small nuclear 28 pseudogene 		ENST00000516759 (RNU7-28P-201) 9843815-9843876 snRNA
ENSG00000254719 (RP11-351I24.3)
 ENST00000532615 (RP11-351I24.3-001) 10272052-10272259 processed_pseudogene
ENSG00000254865 (RP11-748C4.1)
 ENST00000532735 (RP11-748C4.1-001) 10149192-10165109 antisense
CIL_0004J8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031015-ENSMUSG00000038371 CGP 10090 7:110221703-110614922
GeneTranscriptPositionBiotype
ENSMUSG00000031015 (Swap70)
SWA-70 protein 		ENSMUST00000033325 (Swap70-201) 110221703-110283503 protein_coding
ENSMUSG00000038371 (Sbf2)
SET binding factor 2 		ENSMUST00000033058 (Sbf2-201) 110308022-110614920 protein_coding
ENSMUST00000164525 (Sbf2-012) 110341327-110364586 protein_coding
ENSMUST00000164559 (Sbf2-011) 110422447-110442293 protein_coding
ENSMUST00000164599 (Sbf2-013) 110329933-110362145 protein_coding
ENSMUST00000164759 (Sbf2-001) 110308013-110614922 protein_coding
ENSMUST00000165449 (Sbf2-003) 110377256-110614914 retained_intron
ENSMUST00000165992 (Sbf2-009) 110320741-110340285 retained_intron
ENSMUST00000166020 (Sbf2-002) 110309398-110614761 protein_coding
ENSMUST00000166885 (Sbf2-010) 110441474-110462932 protein_coding
ENSMUST00000167652 (Sbf2-008) 110462876-110614761 nonsense_mediated_decay
ENSMUST00000167880 (Sbf2-006) 110425626-110614882 retained_intron
ENSMUST00000169740 (Sbf2-005) 110339184-110352241 retained_intron
ENSMUST00000171218 (Sbf2-007) 110441287-110614905 protein_coding
ENSMUST00000171378 (Sbf2-004) 110377567-110614896 retained_intron
ENSMUSG00000060777 (Gm10087)
predicted gene 10087 		ENSMUST00000167650 (Gm10087-001) 110526792-110527121 processed_pseudogene
ENSMUSG00000090855 (Gm17219)
predicted gene 17219 		ENSMUST00000168439 (Gm17219-001) 110522066-110522658 processed_pseudogene
ENSMUSG00000091117 (Gm9064)
predicted gene 9064 		ENSMUST00000163579 (Gm9064-001) 110425037-110425602 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004J8_0001ENSG00000133789ENST00000318950ENST00000447399ENST00000524817ENST00000526358ENST00000531814ENST00000534562ENST00000534662ENSG00000133812ENST00000256190ENST00000420722ENST00000524961ENST00000525040ENST00000525697ENST00000526353ENST00000527019ENST00000528478ENST00000529587ENST00000530741ENST00000532095ENST00000533584ENST00000533661ENST00000533770ENST00000617179ENSG00000201564ENST00000364694ENSG00000245522ENST00000500698ENST00000525154ENSG00000252568ENST00000516759ENSG00000254719ENST00000532615ENSG00000254865ENST00000532735CIL_0004J8_0002ENSMUSG00000031015ENSMUST00000033325ENSMUSG00000038371ENSMUST00000033058ENSMUST00000164525ENSMUST00000164559ENSMUST00000164599ENSMUST00000164759ENSMUST00000165449ENSMUST00000165992ENSMUST00000166020ENSMUST00000166885ENSMUST00000167652ENSMUST00000167880ENSMUST00000169740ENSMUST00000171218ENSMUST00000171378ENSMUSG00000060777ENSMUST00000167650ENSMUSG00000090855ENSMUST00000168439ENSMUSG00000091117ENSMUST00000163579
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004J8_0001ENSG00000133789ENST00000318950ENST00000447399ENST00000524817ENST00000534562ENST00000534662ENSG00000133812ENST00000256190ENST00000525040ENST00000526353ENST00000533770ENST00000617179ENSG00000201564ENST00000364694ENSG00000245522ENST00000500698ENST00000525154ENSG00000252568ENST00000516759ENSG00000254719ENST00000532615ENSG00000254865ENST00000532735CIL_0004J8_0002ENSMUSG00000031015ENSMUST00000033325ENSMUSG00000038371ENSMUST00000033058ENSMUST00000164759ENSMUST00000166020ENSMUST00000171218ENSMUSG00000060777ENSMUST00000167650ENSMUSG00000090855ENSMUST00000168439ENSMUSG00000091117ENSMUST00000163579
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000133789 ENST00000318950 18.139±0.00 10.896±0.00 2.091±0.00 2.094±0.72 7.039±1.24 10.277±7.02 2.942±1.90 6.134±0.00 2.690±2.24 9.576±3.84 2.832±0.00 5.303±1.29 11.676±1.15 4.637±2.92
ENST00000447399 19.073±0.00 8.737±0.00 1.342±0.00 5.947±0.00 6.000±0.00 4.130±3.36 1.953±1.38 3.129±2.33 2.216±0.00 6.128±4.06 1.507±0.95 5.464±4.63 11.489±11.30 2.862±0.12
ENST00000524817 N/A N/A N/A 0.715±0.00 2.957±0.00 1.084±0.00 0.576±0.00 N/A 1.705±0.00 2.466±0.00 N/A 1.313±0.00 N/A N/A
ENST00000526358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.599±0.00 N/A N/A N/A
ENST00000534662 N/A N/A N/A N/A 6.275±0.00 N/A N/A N/A N/A N/A 0.606±0.00 N/A N/A N/A
ENSG00000133812 ENST00000256190 1.669±0.00 2.240±0.00 3.190±0.00 2.796±0.19 4.387±0.24 3.712±0.63 1.781±0.82 2.730±0.37 2.243±1.76 4.252±0.88 0.795±0.66 4.498±1.75 1.335±0.00 3.123±0.47
ENST00000420722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525040 N/A 5.700±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.291±0.00 5.535±0.00 2.740±0.00 N/A
ENST00000525697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526353 N/A N/A N/A N/A 1.093±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533770 N/A N/A 4.265±0.00 N/A 3.127±0.00 N/A 0.959±0.00 1.068±0.00 N/A N/A N/A 3.205±0.00 N/A N/A
ENST00000617179 N/A N/A N/A 1.761±0.00 N/A 4.013±0.00 1.057±0.00 1.424±0.00 0.429±0.00 N/A 1.679±0.00 2.576±0.00 2.492±0.92 1.900±0.30
ENSG00000201564 ENST00000364694 N/A 0.567±0.00 N/A N/A 0.242±0.00 N/A 0.229±0.00 0.507±0.00 N/A 2.471±0.00 N/A 0.915±0.53 N/A N/A
ENSG00000245522 ENST00000500698 0.290±0.00 0.181±0.00 N/A N/A 0.206±0.08 0.382±0.00 N/A N/A 0.105±0.00 N/A N/A 0.236±0.18 0.370±0.18 0.442±0.06
ENST00000525154 0.073±0.00 N/A N/A 0.132±0.00 0.076±0.00 0.136±0.00 0.054±0.04 0.193±0.00 N/A 0.007±0.00 0.214±0.00 0.243±0.00 0.226±0.00 0.150±0.00
ENSG00000252568 ENST00000516759 N/A N/A N/A N/A N/A 3.125±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254719 ENST00000532615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.459±0.00 N/A
ENSG00000254865 ENST00000532735 N/A 0.021±0.00 N/A N/A N/A 0.037±0.00 0.769±0.75 0.040±0.00 N/A N/A N/A 0.086±0.00 N/A 0.560±0.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031015 ENSMUST00000033325 7.723±3.39 8.007±0.32 6.640±0.52 2.007±0.40 17.220±9.72 8.049±3.16 2.610±1.14 5.219±2.00 2.871±1.59 26.301±1.89 1.783±0.63 11.303±3.06 4.375±2.40 1.268±0.20
ENSMUSG00000038371 ENSMUST00000033058 N/A N/A 1.410±0.00 19.589±7.06 N/A N/A 1.322±0.21 2.733±0.73 N/A N/A 0.303±0.10 N/A 1.779±0.04 7.805±0.57
ENSMUST00000164525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164759 10.683±2.26 6.043±1.92 5.897±0.40 4.111±1.89 7.079±2.18 8.669±0.44 5.297±0.53 7.531±1.24 2.607±1.04 10.453±0.67 1.007±0.36 10.726±2.40 3.935±3.07 8.412±1.92
ENSMUST00000165449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166020 N/A N/A N/A 2.787±0.00 N/A N/A N/A N/A N/A N/A 0.369±0.00 2.311±1.09 1.400±0.08 3.787±0.00
ENSMUST00000166885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171218 N/A N/A N/A N/A N/A N/A N/A N/A 2.943±0.00 N/A N/A N/A N/A N/A
ENSMUST00000171378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000060777 ENSMUST00000167650 N/A N/A N/A 0.601±0.00 N/A N/A 0.216±0.01 0.187±0.00 0.566±0.50 N/A N/A 0.469±0.27 0.304±0.00 0.411±0.18
ENSMUSG00000090855 ENSMUST00000168439 0.429±0.00 0.545±0.00 0.126±0.08 0.630±0.14 0.206±0.12 0.315±0.15 0.152±0.00 0.183±0.09 0.171±0.15 0.343±0.11 N/A 0.330±0.10 0.095±0.06 0.412±0.06
ENSMUSG00000091117 ENSMUST00000163579 N/A N/A 0.182±0.03 0.378±0.23 0.277±0.00 N/A 0.092±0.00 N/A 0.034±0.01 0.258±0.04 N/A 0.058±0.00 0.094±0.01 N/A

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