C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ADP-ribosylation factor-like 8B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134108 ARL8B 9606 + 3:5122220-5180912 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000256496 ARL8B-001 5122220-5180911 protein_coding
  ENST00000419534 ARL8B-005 5122296-5179805 protein_coding
  ENST00000429403 ARL8B-006 5122249-5172735 nonsense_mediated_decay
  ENST00000444332 ARL8B-007 5122292-5170937 retained_intron
  ENST00000455168 ARL8B-003 5122292-5179646 nonsense_mediated_decay
  ENST00000468010 ARL8B-009 5170552-5178969 processed_transcript
  ENST00000476343 ARL8B-008 5174253-5178708 retained_intron
  ENST00000611208 ARL8B-201 5122245-5180912 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256496ENST00000419534ENST00000455168ENST00000611208
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256496 5.236±0.00 12.817±0.00 N/A 35.829±0.00 16.733±0.00 15.380±0.00 10.588±0.00 25.266±0.00 7.345±0.00 11.076±0.00 23.774±0.00 11.038±0.00 N/A 16.725±0.00
ENST00000419534 N/A N/A 2.953±0.00 N/A 3.653±0.00 2.630±0.00 N/A 4.034±0.00 6.139±0.00 9.275±0.00 9.667±0.00 N/A N/A N/A
ENST00000455168 N/A N/A N/A N/A N/A 3.563±0.00 2.398±0.00 N/A N/A N/A 6.195±0.00 2.672±0.00 N/A N/A
ENST00000611208 N/A N/A N/A 29.814±0.00 8.682±0.00 N/A 2.977±0.00 5.319±0.00 4.254±0.00 N/A 5.429±0.00 9.409±6.80 18.271±3.03 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050C CIL_00050C_0001 CGP 3:4979116-5180912
CIL_0005RI CIL_0005RI_0001 CGP 3:5122220-5219957

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 NAS:IEA GTPase activity
GO:0004871 IEA signal transducer activity
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0006184 NAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0007049 IEA cell cycle
GO:0007059 IMP chromosome segregation
GO:0007165 IEA signal transduction
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0019001 IEA guanyl nucleotide binding
GO:0019003 IDA GDP binding
GO:0030496 IDA midbody
GO:0031683 IEA G-protein beta/gamma-subunit complex binding
GO:0043014 IDA alpha-tubulin binding
GO:0048487 IDA beta-tubulin binding
GO:0051233 IDA spindle midzone
GO:0051301 IEA cell division
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006915 arl8ba ADP-ribosylation factor-like 8Ba protein_coding Danio_rerio
ENSMUSG00000030105 Arl8b ADP-ribosylation factor-like 8B protein_coding Mus_musculus

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