C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin VI
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134207 SYT6 9606 - 1:114089291-114153919 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369547 SYT6-201 114089293-114153850 protein_coding
  ENST00000607941 SYT6-001 114089292-114152440 protein_coding
  ENST00000608203 SYT6-006 114137669-114152957 protein_coding
  ENST00000608879 SYT6-008 114139653-114152922 protein_coding
  ENST00000609117 SYT6-007 114089292-114152917 protein_coding
  ENST00000609577 SYT6-005 114138046-114152980 protein_coding
  ENST00000610096 SYT6-002 114091765-114153850 nonsense_mediated_decay
  ENST00000610121 SYT6-003 114089291-114153868 nonsense_mediated_decay
  ENST00000610222 SYT6-004 114093759-114153919 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLungOvaryPlacentaTestisENST00000369547ENST00000608203ENST00000608879ENST00000609117ENST00000610096ENST00000610121ENST00000610222
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000369547 N/A N/A N/A 0.350±0.00 N/A N/A N/A N/A 0.034±0.00 N/A N/A
ENST00000608203 N/A N/A 0.729±0.00 N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A
ENST00000608879 N/A N/A N/A N/A 0.445±0.00 N/A N/A N/A N/A N/A N/A
ENST00000609117 N/A N/A N/A 0.231±0.00 N/A N/A 0.212±0.00 N/A 0.034±0.00 0.283±0.00 N/A
ENST00000610096 N/A 0.058±0.00 0.183±0.00 N/A N/A N/A N/A N/A 0.154±0.01 0.139±0.09 0.361±0.00
ENST00000610121 0.020±0.00 N/A N/A N/A 0.023±0.00 0.115±0.00 N/A 0.020±0.00 N/A 0.044±0.01 0.009±0.00
ENST00000610222 N/A N/A N/A 0.265±0.00 N/A N/A N/A N/A 0.124±0.00 N/A 0.152±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012U CIL_00012U_0002 CGP 1:113979391-114153919

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005829 ISS cytosol
GO:0005886 ISS plasma membrane
GO:0007340 IEA acrosome reaction
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA:ISS integral component of membrane
GO:0019898 ISS extrinsic component of membrane
GO:0019905 IDA syntaxin binding
GO:0030054 IEA cell junction
GO:0030276 IDA clathrin binding
GO:0042802 IEA identical protein binding
GO:0042803 ISS protein homodimerization activity
GO:0046872 IEA metal ion binding
GO:0046982 IEA protein heterodimerization activity
GO:0048306 IEA calcium-dependent protein binding
GO:0060478 IMP acrosomal vesicle exocytosis
GO:0097038 ISS perinuclear endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031463 SYT6 (1 of 2) synaptotagmin VI protein_coding Danio_rerio
ENSDARG00000076730 syt6a synaptotagmin VIa protein_coding Danio_rerio
ENSMUSG00000027849 Syt6 synaptotagmin VI protein_coding Mus_musculus

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