C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin VI
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610222 SYT6-004 ENSG00000134207 9606 - 1:114093759-114153919 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryTestisENST00000610222
Transcript ID Brain Ovary Testis
ENST00000610222 0.265±0.00 0.124±0.00 0.152±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012U CIL_00012U_0002 CGP 1:113979391-114153919

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005829 ISS cytosol
GO:0005886 ISS plasma membrane
GO:0007340 IEA acrosome reaction
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA:ISS integral component of membrane
GO:0019898 ISS extrinsic component of membrane
GO:0019905 IDA syntaxin binding
GO:0030054 IEA cell junction
GO:0030276 IDA clathrin binding
GO:0042803 ISS protein homodimerization activity
GO:0046872 IEA metal ion binding
GO:0060478 IMP acrosomal vesicle exocytosis
GO:0097038 ISS perinuclear endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121834 Syt6-001 protein_coding Mus_musculus 0 2265
ENSMUST00000090697 Syt6-201 protein_coding Mus_musculus 0 2178
ENSMUST00000136049 Syt6-006 nonsense_mediated_decay Mus_musculus 0 1736
ENSMUST00000117221 Syt6-005 protein_coding Mus_musculus 0 1735
ENSMUST00000151985 Syt6-007 nonsense_mediated_decay Mus_musculus 0 1707
ENSMUST00000118117 Syt6-003 protein_coding Mus_musculus 0 1668
ENSMUST00000132325 Syt6-002 nonsense_mediated_decay Mus_musculus 0 1668
ENSMUST00000118563 Syt6-004 protein_coding Mus_musculus 0 1421
ENSMUST00000183637 Syt6-008 protein_coding Mus_musculus 0 475

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