C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin VI
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610121 SYT6-003 ENSG00000134207 9606 - 1:114089291-114153868 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLungPlacentaTestisENST00000610121
Transcript ID Adipose Breast Colon Lung Placenta Testis
ENST00000610121 0.020±0.00 0.023±0.00 0.115±0.00 0.020±0.00 0.044±0.01 0.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012U CIL_00012U_0002 CGP 1:113979391-114153919

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000132325 Syt6-002 nonsense_mediated_decay Mus_musculus 0 2516
ENSMUST00000136049 Syt6-006 nonsense_mediated_decay Mus_musculus 0 1938
ENSMUST00000090697 Syt6-201 protein_coding Mus_musculus 0 1668
ENSMUST00000118117 Syt6-003 protein_coding Mus_musculus 0 1668
ENSMUST00000117221 Syt6-005 protein_coding Mus_musculus 0 1668
ENSMUST00000151985 Syt6-007 nonsense_mediated_decay Mus_musculus 0 1668
ENSMUST00000121834 Syt6-001 protein_coding Mus_musculus 0 1668
ENSMUST00000118563 Syt6-004 protein_coding Mus_musculus 0 1279

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