C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin VI
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027849 Syt6 10090 + 3:103575231-103645569 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090697 Syt6-201 103575281-103635179 protein_coding
  ENSMUST00000117221 Syt6-005 103576126-103635178 protein_coding
  ENSMUST00000118117 Syt6-003 103576142-103627556 protein_coding
  ENSMUST00000118563 Syt6-004 103576142-103645569 protein_coding
  ENSMUST00000121834 Syt6-001 103575231-103630946 protein_coding
  ENSMUST00000132325 Syt6-002 103575282-103635179 nonsense_mediated_decay
  ENSMUST00000136049 Syt6-006 103575300-103632768 nonsense_mediated_decay
  ENSMUST00000151985 Syt6-007 103575378-103630927 nonsense_mediated_decay
  ENSMUST00000183637 Syt6-008 103576081-103587240 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090697ENSMUST00000117221ENSMUST00000118117ENSMUST00000118563ENSMUST00000121834ENSMUST00000132325ENSMUST00000136049ENSMUST00000151985ENSMUST00000183637
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090697 N/A N/A N/A N/A 0.532±0.00 N/A N/A 0.095±0.01 N/A 0.398±0.05 N/A N/A
ENSMUST00000117221 0.080±0.00 0.008±0.00 2.854±1.39 0.036±0.00 0.422±0.14 N/A N/A 0.221±0.09 N/A 0.222±0.14 N/A N/A
ENSMUST00000118117 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.00 N/A N/A
ENSMUST00000118563 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.434±0.35 N/A N/A
ENSMUST00000121834 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.290±0.03 N/A N/A
ENSMUST00000132325 0.051±0.00 0.005±0.00 1.243±0.40 0.054±0.00 0.279±0.01 0.007±0.00 0.028±0.00 N/A 0.005±0.00 N/A 0.008±0.00 N/A
ENSMUST00000136049 N/A N/A N/A 0.024±0.00 0.663±0.15 N/A N/A 0.180±0.07 N/A 0.462±0.26 N/A 0.044±0.03
ENSMUST00000151985 0.056±0.01 N/A 5.829±0.00 0.065±0.00 N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A
ENSMUST00000183637 0.167±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006X0 CIL_0006X0_0002 CGP 3:103575231-103738001

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0007340 IDA acrosome reaction
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA:IDA integral component of membrane
GO:0019898 IDA extrinsic component of membrane
GO:0019905 IEA syntaxin binding
GO:0030054 IEA cell junction
GO:0030276 IEA clathrin binding
GO:0042802 IPI identical protein binding
GO:0042803 IDA protein homodimerization activity
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0048306 IPI calcium-dependent protein binding
GO:0060478 IEA acrosomal vesicle exocytosis
GO:0097038 IDA perinuclear endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031463 SYT6 (1 of 2) synaptotagmin VI protein_coding Danio_rerio
ENSDARG00000076730 syt6a synaptotagmin VIa protein_coding Danio_rerio
ENSG00000134207 SYT6 synaptotagmin VI protein_coding Homo_sapiens

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