C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379888 RBM17-003 ENSG00000134453 9606 + 10:6088987-6116880 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379888
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379888 10.222±0.00 9.243±0.00 0.721±0.00 4.541±1.30 3.236±0.21 2.967±1.41 4.333±3.01 1.487±0.00 2.484±0.18 2.889±0.00 6.014±3.95 13.211±5.70 12.000±0.76 11.938±2.82

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IMP alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040314 Rbm17-001 protein_coding Mus_musculus 0 1712
ENSMUST00000150369 Rbm17-005 processed_transcript Mus_musculus 0 527
ENSMUST00000156469 Rbm17-003 protein_coding Mus_musculus 0 457
ENSMUST00000125808 Rbm17-006 processed_transcript Mus_musculus 0 364

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