C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre-mRNA processing factor 38A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134748 PRPF38A 9606 + 1:52404564-52420839 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257181 PRPF38A-002 52404564-52420839 protein_coding
  ENST00000474048 PRPF38A-003 52404628-52417022 processed_transcript
  ENST00000487160 PRPF38A-001 52404620-52409074 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257181ENST00000474048ENST00000487160
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257181 2.761±0.00 4.571±0.00 3.110±0.30 2.077±0.93 3.740±0.99 0.776±0.47 3.153±1.55 1.483±0.76 2.707±0.14 0.766±0.23 6.256±3.32 3.119±0.62 6.033±0.43
ENST00000474048 5.639±0.00 5.238±0.00 3.447±0.00 4.581±0.00 6.956±0.00 2.601±1.17 5.134±0.00 3.044±0.00 4.906±0.00 3.717±0.00 12.079±1.93 10.504±1.80 17.682±2.40
ENST00000487160 N/A N/A N/A 5.004±0.00 N/A 1.051±0.00 N/A N/A 3.944±0.00 N/A 4.800±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039213 prpf38a PRP38 pre-mRNA processing factor 38 (yeast) domain containing A protein_coding Danio_rerio
ENSMUSG00000063800 Prpf38a PRP38 pre-mRNA processing factor 38 (yeast) domain containing A protein_coding Mus_musculus

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