C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000063800 Prpf38a 10090 - 4:108563172-108579336 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079213 Prpf38a-001 108564870-108579336 protein_coding
  ENSMUST00000125106 Prpf38a-002 108564873-108573216 processed_transcript
  ENSMUST00000132951 Prpf38a-003 108563172-108567027 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079213ENSMUST00000125106ENSMUST00000132951
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079213 5.220±1.27 1.188±0.44 14.994±1.76 24.440±11.62 2.325±0.49 2.837±1.23 2.359±0.56 3.278±0.47 7.780±6.37 3.626±0.70 5.144±0.59 7.536±7.34 21.297±7.19 12.202±9.06
ENSMUST00000125106 N/A 0.242±0.07 N/A N/A 0.373±0.05 N/A N/A 0.378±0.00 0.206±0.00 N/A N/A 0.986±0.32 N/A N/A
ENSMUST00000132951 0.977±0.00 0.310±0.00 N/A 3.735±0.24 0.682±0.00 N/A 0.318±0.00 N/A 1.351±0.00 N/A N/A 1.302±0.50 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CE CIL_0001CE_0002 CGP 4:108563172-108614833

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039213 prpf38a PRP38 pre-mRNA processing factor 38 (yeast) domain containing A protein_coding Danio_rerio
ENSG00000134748 PRPF38A pre-mRNA processing factor 38A protein_coding Homo_sapiens

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