C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-mRNA processing factor 38A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257181 PRPF38A-002 ENSG00000134748 9606 + 1:52404564-52420839 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257181
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257181 2.761±0.00 4.571±0.00 3.110±0.30 2.077±0.93 3.740±0.99 0.776±0.47 3.153±1.55 1.483±0.76 2.707±0.14 0.766±0.23 6.256±3.32 3.119±0.62 6.033±0.43

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079213 Prpf38a-001 protein_coding Mus_musculus 0 1234
ENSMUST00000125106 Prpf38a-002 processed_transcript Mus_musculus 0 239

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