C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 138, E3 ubiquitin protein ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134758 RNF138 9606 + 18:32091855-32131561 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000257190 RNF138-002 32092690-32130715 protein_coding
  ENST00000261593 RNF138-001 32091855-32131561 protein_coding
  ENST00000577999 RNF138-009 32123525-32129302 protein_coding
  ENST00000578107 RNF138-007 32092610-32113794 protein_coding
  ENST00000578914 RNF138-004 32091891-32113846 protein_coding
  ENST00000580499 RNF138-008 32092702-32124769 protein_coding
  ENST00000580519 RNF138-006 32091902-32109512 processed_transcript
  ENST00000583733 RNF138-005 32092663-32113941 retained_intron
  ENST00000585103 RNF138-003 32091884-32113813 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257190ENST00000261593ENST00000578107ENST00000580499ENST00000583733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257190 3.100±0.00 4.284±0.00 N/A 2.283±0.00 1.872±0.41 1.360±0.00 0.638±0.23 2.665±0.00 1.259±0.00 2.847±0.00 1.606±0.00 2.602±0.55 1.826±0.57 14.554±3.02
ENST00000261593 2.186±0.00 2.584±0.00 N/A 1.980±0.00 1.679±0.38 1.341±0.00 0.757±0.00 1.021±0.30 0.906±0.04 1.039±0.00 0.740±0.00 2.759±0.76 1.844±0.16 9.541±2.78
ENST00000578107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.574±0.00 9.746±0.00 106.996±0.00
ENST00000580499 N/A N/A 1.746±0.00 9.402±0.00 5.010±0.00 N/A N/A N/A N/A N/A 1.577±0.00 N/A N/A N/A
ENST00000583733 N/A N/A N/A N/A N/A 5.543±0.00 N/A N/A 10.962±0.00 5.270±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003X2 CIL_0003X2_0001 CGP 18:32018372-32131561

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0019901 IPI protein kinase binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000024317 Rnf138 ring finger protein 138 protein_coding Mus_musculus

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