C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 138, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257190 RNF138-002 ENSG00000134758 9606 + 18:32092690-32130715 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000257190
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000257190 3.100±0.00 4.284±0.00 2.283±0.00 1.872±0.41 1.360±0.00 0.638±0.23 2.665±0.00 1.259±0.00 2.847±0.00 1.606±0.00 2.602±0.55 1.826±0.57 14.554±3.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003X2 CIL_0003X2_0001 CGP 18:32018372-32131561

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0019901 IPI protein kinase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052396 Rnf138-201 protein_coding Mus_musculus 0 623
ENSMUST00000072847 Rnf138-202 protein_coding Mus_musculus 0 309
ENSMUST00000122052 Gm12785-001 processed_pseudogene Mus_musculus 0 219

Loading