C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003X2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101695-ENSG00000134758 CGP 9606 18:32018372-32131561
GeneTranscriptPositionBiotype
ENSG00000101695 (RNF125)
ring finger protein 125, E3 ubiquitin protein ligase 		ENST00000217740 (RNF125-001) 32018372-32073213 protein_coding
ENST00000580209 (RNF125-002) 32037185-32066141 nonsense_mediated_decay
ENST00000580863 (RNF125-005) 32042079-32068428 retained_intron
ENST00000583384 (RNF125-003) 32041823-32068489 processed_transcript
ENST00000583814 (RNF125-004) 32041906-32068550 retained_intron
ENSG00000134758 (RNF138)
ring finger protein 138, E3 ubiquitin protein ligase 		ENST00000257190 (RNF138-002) 32092690-32130715 protein_coding
ENST00000261593 (RNF138-001) 32091855-32131561 protein_coding
ENST00000577999 (RNF138-009) 32123525-32129302 protein_coding
ENST00000578107 (RNF138-007) 32092610-32113794 protein_coding
ENST00000578914 (RNF138-004) 32091891-32113846 protein_coding
ENST00000580499 (RNF138-008) 32092702-32124769 protein_coding
ENST00000580519 (RNF138-006) 32091902-32109512 processed_transcript
ENST00000583733 (RNF138-005) 32092663-32113941 retained_intron
ENST00000585103 (RNF138-003) 32091884-32113813 processed_transcript
ENSG00000141441 (GAREM)
GRB2 associated, regulator of MAPK1 		ENST00000269209 (GAREM-002) 32267500-32470432 protein_coding
ENST00000399218 (GAREM-001) 32263522-32470484 protein_coding
ENST00000578619 (GAREM-003) 32287876-32331670 processed_transcript
ENST00000583696 (GAREM-004) 32124877-32287095 protein_coding
ENSG00000214917 (RP11-53I6.1)
 ENST00000484967 (RP11-53I6.1-001) 32075885-32076272 processed_pseudogene
ENSG00000263393 (RP11-53I6.4)
 ENST00000583138 (RP11-53I6.4-001) 32122400-32124478 antisense
ENSG00000265063 (AC009831.1)
 ENST00000582018 (AC009831.1-201) 32060905-32060989 miRNA
ENSG00000274275 (RP11-326K13.5)
 ENST00000620744 (RP11-326K13.5-001) 32031035-32031359 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0003X2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033107-ENSMUSG00000024317 CGP 10090 18:20944625-21028223
GeneTranscriptPositionBiotype
ENSMUSG00000024317 (Rnf138)
ring finger protein 138 		ENSMUST00000052396 (Rnf138-201) 21001341-21028223 protein_coding
ENSMUST00000072847 (Rnf138-202) 21001341-21028223 protein_coding
ENSMUSG00000033107 (Rnf125)
ring finger protein 125 		ENSMUST00000050004 (Rnf125-201) 20944625-20983848 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003X2_0001ENSG00000101695ENST00000217740ENST00000580209ENST00000580863ENST00000583384ENST00000583814ENSG00000134758ENST00000257190ENST00000261593ENST00000577999ENST00000578107ENST00000578914ENST00000580499ENST00000580519ENST00000583733ENST00000585103ENSG00000141441ENST00000269209ENST00000399218ENST00000578619ENST00000583696ENSG00000214917ENST00000484967ENSG00000263393ENST00000583138ENSG00000265063ENST00000582018ENSG00000274275ENST00000620744CIL_0003X2_0002ENSMUSG00000024317ENSMUST00000052396ENSMUST00000072847ENSMUSG00000033107ENSMUST00000050004
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003X2_0001ENSG00000101695ENST00000217740ENST00000580209ENSG00000134758ENST00000257190ENST00000261593ENST00000578107ENST00000580499ENST00000583733ENSG00000141441ENST00000269209ENST00000399218ENSG00000214917ENST00000484967ENSG00000263393ENST00000583138ENSG00000265063ENST00000582018ENSG00000274275ENST00000620744CIL_0003X2_0002ENSMUSG00000024317ENSMUST00000052396ENSMUST00000072847ENSMUSG00000033107ENSMUST00000050004
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101695 ENST00000217740 2.548±0.00 1.709±0.00 N/A 0.577±0.19 1.297±0.71 1.065±0.02 1.077±0.00 1.082±0.25 1.344±0.51 1.113±0.52 N/A 0.674±0.19 1.052±0.00 N/A
ENST00000580209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.643±0.00 N/A N/A N/A
ENST00000580863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000134758 ENST00000257190 3.100±0.00 4.284±0.00 N/A 2.283±0.00 1.872±0.41 1.360±0.00 0.638±0.23 2.665±0.00 1.259±0.00 2.847±0.00 1.606±0.00 2.602±0.55 1.826±0.57 14.554±3.02
ENST00000261593 2.186±0.00 2.584±0.00 N/A 1.980±0.00 1.679±0.38 1.341±0.00 0.757±0.00 1.021±0.30 0.906±0.04 1.039±0.00 0.740±0.00 2.759±0.76 1.844±0.16 9.541±2.78
ENST00000577999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.574±0.00 9.746±0.00 106.996±0.00
ENST00000578914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580499 N/A N/A 1.746±0.00 9.402±0.00 5.010±0.00 N/A N/A N/A N/A N/A 1.577±0.00 N/A N/A N/A
ENST00000580519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583733 N/A N/A N/A N/A N/A 5.543±0.00 N/A N/A 10.962±0.00 5.270±0.00 N/A N/A N/A N/A
ENST00000585103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000141441 ENST00000269209 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.174±0.00 N/A 0.507±0.00 0.495±0.00 N/A
ENST00000399218 1.306±0.00 0.337±0.00 0.479±0.00 1.464±0.00 1.211±0.59 1.188±0.66 0.976±0.56 0.987±0.00 0.920±0.23 0.685±0.02 0.807±0.56 0.741±0.08 1.006±0.46 1.617±0.57
ENST00000578619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214917 ENST00000484967 N/A 0.152±0.00 N/A 0.039±0.00 0.075±0.00 1.469±0.00 0.200±0.00 N/A 0.166±0.00 0.035±0.00 0.065±0.00 0.174±0.00 0.119±0.04 N/A
ENSG00000263393 ENST00000583138 0.311±0.00 0.181±0.00 N/A 0.272±0.02 N/A 0.233±0.00 0.030±0.00 0.484±0.41 0.159±0.13 0.038±0.00 N/A 0.301±0.00 0.109±0.03 0.233±0.17
ENSG00000265063 ENST00000582018 N/A N/A N/A N/A N/A N/A N/A 1.317±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000274275 ENST00000620744 0.166±0.00 0.251±0.00 N/A N/A 1.959±1.63 1.049±0.00 0.221±0.15 N/A N/A N/A N/A N/A 0.276±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024317 ENSMUST00000052396 1.820±0.35 N/A 2.819±0.40 2.931±1.78 1.475±0.16 1.558±0.01 0.371±0.07 0.880±0.28 1.127±0.32 1.406±0.31 0.852±0.06 3.452±1.95 2.593±1.40 14.424±0.00
ENSMUST00000072847 0.824±0.17 4.846±1.65 2.163±0.18 3.125±1.85 3.108±2.25 1.945±0.39 0.294±0.12 0.977±0.40 0.900±0.30 2.121±0.81 0.279±0.18 3.940±2.07 1.398±0.54 66.303±22.48
ENSMUSG00000033107 ENSMUST00000050004 4.374±0.12 N/A N/A 0.233±0.09 3.910±0.05 3.028±0.73 2.521±0.00 1.235±0.15 6.123±6.44 5.319±0.00 0.571±0.19 1.379±0.89 0.731±0.39 5.501±2.14

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