C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IV, alpha 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000134871 COL4A2 9606 + 13:110305812-110513027 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360467 COL4A2-001 110307267-110513027 protein_coding
  ENST00000400163 COL4A2-004 110305812-110424868 protein_coding
  ENST00000462309 COL4A2-006 110430051-110430883 processed_transcript
  ENST00000463084 COL4A2-003 110507444-110512133 processed_transcript
  ENST00000478681 COL4A2-007 110462022-110462449 processed_transcript
  ENST00000480609 COL4A2-009 110506468-110508330 retained_intron
  ENST00000480771 COL4A2-005 110307267-110328549 processed_transcript
  ENST00000483683 COL4A2-008 110477923-110485660 processed_transcript
  ENST00000494852 COL4A2-002 110469217-110473594 processed_transcript
  ENST00000617564 COL4A2-010 110458888-110459755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360467ENST00000400163
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360467 265.315±0.00 98.245±0.00 5.994±0.00 4.242±3.82 113.576±84.65 86.251±74.57 22.897±19.62 34.905±33.63 17.026±11.81 116.904±106.65 6.945±3.58 50.465±30.16 638.948±245.38 42.160±32.84
ENST00000400163 N/A N/A N/A 2.723±0.00 N/A N/A 15.240±0.00 N/A 104.901±0.00 33.572±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077O CIL_00077O_0001 CGP 13:109752698-110307149
CIL_00058N CIL_00058N_0002 CGP 13:110148963-110513027
CIL_00058M CIL_00058M_0002 CGP 13:110305812-110561733

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005201 TAS:IEA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005587 TAS collagen type IV trimer
GO:0005604 IEA basement membrane
GO:0005788 TAS endoplasmic reticulum lumen
GO:0006351 IEA transcription, DNA-templated
GO:0007411 TAS axon guidance
GO:0016525 IDA negative regulation of angiogenesis
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 NAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix
GO:0035987 IEP endodermal cell differentiation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0070062 IDA extracellular vesicular exosome
GO:0071560 IEA cellular response to transforming growth factor beta stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020781 col4a2 collagen, type IV, alpha 2 protein_coding Danio_rerio
ENSMUSG00000031503 Col4a2 collagen, type IV, alpha 2 protein_coding Mus_musculus

Loading