C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00058M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000020781-ENSDARG00000005049 CGP 7955 9:8773012-8951415
GeneTranscriptPositionBiotype
ENSDARG00000005049 (rab20)
RAB20, member RAS oncogene family 		ENSDART00000138527 (rab20-001) 8943700-8951415 protein_coding
ENSDART00000144673 (rab20-002) 8944161-8951302 protein_coding
ENSDARG00000077119 (CARKD)
carbohydrate kinase domain containing 		ENSDART00000111214 (CARKD-202) 8954521-8979153 protein_coding
ENSDART00000130208 (CARKD-201) 8955176-8979641 protein_coding
ENSDART00000132068 (CARKD-001) 8950960-8956232 protein_coding
ENSDART00000132443 (CARKD-007) 8954532-8966248 protein_coding
ENSDART00000134954 (CARKD-002) 8954196-8974785 protein_coding
ENSDART00000139687 (CARKD-006) 8954532-8960216 protein_coding
ENSDART00000140232 (CARKD-005) 8954524-8966324 protein_coding
ENSDART00000143671 (CARKD-003) 8954216-8960231 protein_coding
ENSDART00000147098 (CARKD-004) 8954249-8979643 protein_coding
ENSDART00000147820 (CARKD-008) 8955007-8956152 protein_coding
CIL_00058M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000134871-ENSG00000139832 CGP 9606 13:110305812-110561733
GeneTranscriptPositionBiotype
ENSG00000134871 (COL4A2)
collagen, type IV, alpha 2 		ENST00000360467 (COL4A2-001) 110307267-110513027 protein_coding
ENST00000400163 (COL4A2-004) 110305812-110424868 protein_coding
ENST00000462309 (COL4A2-006) 110430051-110430883 processed_transcript
ENST00000463084 (COL4A2-003) 110507444-110512133 processed_transcript
ENST00000478681 (COL4A2-007) 110462022-110462449 processed_transcript
ENST00000480609 (COL4A2-009) 110506468-110508330 retained_intron
ENST00000480771 (COL4A2-005) 110307267-110328549 processed_transcript
ENST00000483683 (COL4A2-008) 110477923-110485660 processed_transcript
ENST00000494852 (COL4A2-002) 110469217-110473594 processed_transcript
ENST00000617564 (COL4A2-010) 110458888-110459755 protein_coding
ENSG00000139832 (RAB20)
RAB20, member RAS oncogene family 		ENST00000267328 (RAB20-001) 110523066-110561733 protein_coding
ENSG00000187498 (COL4A1)
collagen, type IV, alpha 1 		ENST00000375820 (COL4A1-001) 110148963-110307149 protein_coding
ENST00000467182 (COL4A1-004) 110161018-110163490 retained_intron
ENST00000474391 (COL4A1-003) 110161958-110163558 retained_intron
ENST00000543140 (COL4A1-005) 110190743-110307131 protein_coding
ENST00000615732 (COL4A1-006) 110206661-110298899 protein_coding
ENSG00000275611 (RP11-291I6.2)
 ENST00000619688 (RP11-291I6.2-001) 110429026-110429342 sense_intronic
CIL_00058M_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031503-ENSMUSG00000031504 CGP 10090 8:11312805-11478638
GeneTranscriptPositionBiotype
ENSMUSG00000031502 (Col4a1)
collagen, type IV, alpha 1 		ENSMUST00000033898 (Col4a1-001) 11198423-11312826 protein_coding
ENSMUST00000130488 (Col4a1-002) 11212401-11216801 processed_transcript
ENSMUSG00000031503 (Col4a2)
collagen, type IV, alpha 2 		ENSMUST00000033899 (Col4a2-001) 11312805-11449287 protein_coding
ENSMUST00000145295 (Col4a2-002) 11404908-11421254 protein_coding
ENSMUST00000146219 (Col4a2-003) 11441109-11443702 processed_transcript
ENSMUSG00000031504 (Rab20)
RAB20, member RAS oncogene family 		ENSMUST00000033900 (Rab20-201) 11453392-11478638 protein_coding
ENSMUSG00000096957 (E230013L22Rik)
RIKEN cDNA E230013L22 gene 		ENSMUST00000180408 (E230013L22Rik-201) 11477929-11480241 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058M_0001ENSDARG00000005049ENSDART00000138527ENSDART00000144673ENSDARG00000077119ENSDART00000111214ENSDART00000130208ENSDART00000132068ENSDART00000132443ENSDART00000134954ENSDART00000139687ENSDART00000140232ENSDART00000143671ENSDART00000147098ENSDART00000147820CIL_00058M_0002ENSG00000134871ENST00000360467ENST00000400163ENST00000462309ENST00000463084ENST00000478681ENST00000480609ENST00000480771ENST00000483683ENST00000494852ENST00000617564ENSG00000139832ENST00000267328ENSG00000187498ENST00000375820ENST00000467182ENST00000474391ENST00000543140ENST00000615732ENSG00000275611ENST00000619688CIL_00058M_0003ENSMUSG00000031502ENSMUST00000033898ENSMUST00000130488ENSMUSG00000031503ENSMUST00000033899ENSMUST00000145295ENSMUST00000146219ENSMUSG00000031504ENSMUST00000033900ENSMUSG00000096957ENSMUST00000180408
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058M_0001ENSDARG00000005049ENSDART00000138527ENSDARG00000077119ENSDART00000111214ENSDART00000130208ENSDART00000134954ENSDART00000147098ENSDART00000147820CIL_00058M_0002ENSG00000134871ENST00000360467ENST00000400163ENSG00000139832ENST00000267328ENSG00000187498ENST00000375820ENST00000543140ENSG00000275611ENST00000619688CIL_00058M_0003ENSMUSG00000031502ENSMUST00000033898ENSMUSG00000031503ENSMUST00000033899ENSMUSG00000031504ENSMUST00000033900ENSMUSG00000096957ENSMUST00000180408
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005049 ENSDART00000138527 N/A N/A N/A N/A N/A N/A 8.460±1.18 18.666±10.31 1.688±0.00 N/A 1.978±0.00 N/A N/A N/A
ENSDART00000144673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000077119 ENSDART00000111214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.142±0.00 N/A N/A N/A
ENSDART00000130208 N/A N/A N/A 10.485±0.00 N/A N/A 2.693±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000132068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000132443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134954 N/A N/A N/A N/A N/A N/A N/A N/A 1.641±0.00 N/A N/A N/A N/A N/A
ENSDART00000139687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147098 N/A N/A N/A 13.235±1.87 N/A N/A 4.482±2.10 10.080±1.64 1.441±0.00 N/A 1.766±0.00 N/A N/A N/A
ENSDART00000147820 N/A N/A N/A 11.710±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134871 ENST00000360467 265.315±0.00 98.245±0.00 5.994±0.00 4.242±3.82 113.576±84.65 86.251±74.57 22.897±19.62 34.905±33.63 17.026±11.81 116.904±106.65 6.945±3.58 50.465±30.16 638.948±245.38 42.160±32.84
ENST00000400163 N/A N/A N/A 2.723±0.00 N/A N/A 15.240±0.00 N/A 104.901±0.00 33.572±0.00 N/A N/A N/A N/A
ENST00000462309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139832 ENST00000267328 18.119±0.00 12.187±0.00 1.014±0.00 1.490±1.25 6.636±3.53 5.195±3.35 2.461±1.98 9.192±5.83 9.710±8.67 10.729±6.79 1.278±1.15 14.293±6.53 13.686±2.06 7.919±0.63
ENSG00000187498 ENST00000375820 152.829±0.00 53.677±0.00 5.161±0.00 2.110±1.73 80.201±52.63 64.973±55.96 15.291±10.79 10.128±7.53 14.050±9.55 115.204±105.25 9.806±5.04 37.284±21.23 471.781±170.33 19.862±16.53
ENST00000467182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543140 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.657±0.00 N/A N/A N/A N/A
ENST00000615732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000275611 ENST00000619688 0.373±0.00 0.357±0.00 N/A 0.036±0.00 1.822±1.79 1.123±0.00 0.065±0.00 0.170±0.00 1.393±1.33 1.757±0.00 N/A 0.119±0.01 0.726±0.58 0.139±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031502 ENSMUST00000033898 91.873±27.58 83.111±6.80 97.571±20.14 15.413±6.13 145.601±15.06 63.130±1.86 61.149±5.05 39.153±17.68 6.848±2.49 99.739±40.18 16.273±4.27 135.802±24.96 239.179±149.54 4.078±1.18
ENSMUST00000130488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031503 ENSMUST00000033899 68.704±16.80 37.082±3.19 74.399±14.13 19.088±7.46 43.910±6.59 20.064±1.96 24.006±4.81 16.417±1.00 2.776±1.71 107.303±21.29 13.674±2.92 45.981±29.29 213.697±111.35 1.952±0.30
ENSMUST00000145295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031504 ENSMUST00000033900 2.740±1.98 7.519±1.31 6.339±1.75 0.147±0.06 5.822±0.48 14.665±0.66 12.329±3.71 7.217±2.02 3.682±2.96 4.724±3.45 1.174±0.17 9.371±5.82 6.553±2.71 5.570±2.67
ENSMUSG00000096957 ENSMUST00000180408 1.037±0.61 1.352±0.67 3.306±0.68 0.045±0.02 1.007±0.31 2.532±0.47 7.068±3.02 4.871±1.35 1.138±0.69 1.351±0.39 0.602±0.16 2.522±1.30 1.624±0.71 1.588±0.60

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