C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 21A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135365 PHF21A 9606 - 11:45929323-46121178 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323180 PHF21A-002 45932566-46121178 protein_coding
  ENST00000418153 PHF21A-004 45933481-46121010 protein_coding
  ENST00000524497 PHF21A-021 45971347-46120963 protein_coding
  ENST00000525438 PHF21A-010 46079141-46119844 protein_coding
  ENST00000525676 PHF21A-016 45933831-45936507 protein_coding
  ENST00000525679 PHF21A-014 45971278-46027078 processed_transcript
  ENST00000527401 PHF21A-003 45929323-45971369 retained_intron
  ENST00000527753 PHF21A-015 45938157-45965458 processed_transcript
  ENST00000527782 PHF21A-008 46084186-46119862 protein_coding
  ENST00000528893 PHF21A-012 46090507-46119827 processed_transcript
  ENST00000529734 PHF21A-007 45979816-46121104 protein_coding
  ENST00000529782 PHF21A-011 45979863-46119787 protein_coding
  ENST00000530312 PHF21A-006 46120389-46121058 processed_transcript
  ENST00000530587 PHF21A-017 45933347-45938264 nonsense_mediated_decay
  ENST00000531959 PHF21A-020 45971348-46092205 protein_coding
  ENST00000532010 PHF21A-019 46084193-46119835 protein_coding
  ENST00000532028 PHF21A-018 45933985-45945869 protein_coding
  ENST00000532883 PHF21A-013 45971139-46121047 nonsense_mediated_decay
  ENST00000533757 PHF21A-009 46076754-46119853 protein_coding
  ENST00000534724 PHF21A-023 45935694-45936837 retained_intron
  ENST00000534766 PHF21A-022 45938219-45953615 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323180ENST00000418153ENST00000527401ENST00000529734ENST00000532028ENST00000532883ENST00000533757
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323180 5.916±0.00 3.911±0.00 N/A 2.035±0.94 2.906±1.59 4.482±3.77 2.668±2.15 1.220±0.71 0.857±0.44 4.658±3.58 2.955±0.00 2.322±2.15 1.387±0.36 9.883±3.25
ENST00000418153 3.418±0.00 N/A N/A 2.552±0.00 N/A 3.949±0.00 1.870±1.32 1.249±0.36 N/A N/A 1.840±0.00 3.472±1.61 2.250±0.97 15.773±0.00
ENST00000527401 1.104±0.00 N/A 0.249±0.00 N/A 0.675±0.11 1.701±0.00 0.550±0.00 N/A 0.103±0.00 1.360±0.00 0.186±0.00 1.115±0.74 0.913±0.00 1.998±0.00
ENST00000529734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.444±0.00 N/A N/A N/A
ENST00000532028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.649±0.00 N/A
ENST00000532883 N/A N/A N/A 8.730±0.00 N/A 1.488±0.00 N/A 0.844±0.00 1.706±0.00 N/A N/A 2.141±0.00 N/A N/A
ENST00000533757 N/A N/A N/A 16.447±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V0 CIL_0002V0_0002 CGP 11:45929323-46321422

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001967 IEA suckling behavior
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007596 TAS blood coagulation
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006878 phf21aa PHD finger protein 21Aa protein_coding Danio_rerio
ENSDARG00000021378 phf21ab PHD finger protein 21Ab protein_coding Danio_rerio
ENSMUSG00000058318 Phf21a PHD finger protein 21A protein_coding Mus_musculus

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