C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 21A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058318 Phf21a 10090 + 2:92093117-92364666 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044036 Phf21a-201 92093117-92364666 protein_coding
  ENSMUST00000068702 Phf21a-202 92093137-92364666 protein_coding
  ENSMUST00000090586 Phf21a-203 92221562-92364666 protein_coding
  ENSMUST00000111290 Phf21a-204 92093137-92364666 protein_coding
  ENSMUST00000111291 Phf21a-002 92185483-92360901 protein_coding
  ENSMUST00000111292 Phf21a-003 92184276-92360893 protein_coding
  ENSMUST00000111293 Phf21a-001 92184175-92361835 protein_coding
  ENSMUST00000111294 Phf21a-004 92184106-92361829 protein_coding
  ENSMUST00000111297 Phf21a-205 92093137-92364666 protein_coding
  ENSMUST00000128781 Phf21a-006 92185459-92221592 protein_coding
  ENSMUST00000138995 Phf21a-007 92186465-92221604 protein_coding
  ENSMUST00000142528 Phf21a-005 92184268-92214089 processed_transcript
  ENSMUST00000159366 Phf21a-014 92221570-92327104 protein_coding
  ENSMUST00000159727 Phf21a-009 92320429-92330698 protein_coding
  ENSMUST00000159961 Phf21a-010 92228479-92360430 protein_coding
  ENSMUST00000160235 Phf21a-008 92184302-92214598 retained_intron
  ENSMUST00000161044 Phf21a-016 92348911-92356993 retained_intron
  ENSMUST00000161067 Phf21a-015 92330727-92359177 protein_coding
  ENSMUST00000162146 Phf21a-013 92184276-92320269 protein_coding
  ENSMUST00000162188 Phf21a-012 92184792-92228475 protein_coding
  ENSMUST00000162497 Phf21a-011 92184302-92221589 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044036ENSMUST00000068702ENSMUST00000090586ENSMUST00000111290ENSMUST00000111291ENSMUST00000111292ENSMUST00000111293ENSMUST00000111294ENSMUST00000111297ENSMUST00000159366ENSMUST00000159727ENSMUST00000159961ENSMUST00000161067ENSMUST00000162188
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044036 N/A N/A N/A N/A N/A N/A N/A N/A 0.423±0.16 N/A 0.802±0.00 N/A N/A N/A
ENSMUST00000068702 N/A N/A N/A 2.917±1.38 N/A N/A N/A N/A N/A N/A N/A 2.915±0.19 N/A N/A
ENSMUST00000090586 4.601±0.77 3.935±1.85 2.907±0.42 7.037±3.04 4.563±1.51 4.146±2.06 1.721±0.00 3.182±0.54 1.073±0.06 6.424±1.31 0.782±0.29 11.881±1.52 1.028±0.39 1.933±0.34
ENSMUST00000111290 N/A 2.460±0.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000111291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.676±0.00 N/A 0.909±0.00 N/A
ENSMUST00000111292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.893±0.00 N/A
ENSMUST00000111293 3.856±0.00 N/A N/A N/A 5.089±0.00 N/A 0.644±0.00 N/A 1.061±0.19 N/A 1.257±0.28 N/A 1.549±0.18 2.300±0.41
ENSMUST00000111294 N/A N/A N/A N/A 4.526±0.00 N/A N/A N/A 0.585±0.17 N/A 0.805±0.28 2.223±0.00 1.055±0.27 2.240±0.25
ENSMUST00000111297 N/A 3.657±1.79 N/A 2.020±0.00 N/A N/A 0.475±0.00 1.473±0.00 N/A 2.110±0.00 N/A 3.380±0.07 N/A 1.615±0.00
ENSMUST00000159366 N/A 16.599±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.331±8.77 N/A N/A
ENSMUST00000159727 N/A N/A N/A N/A 16.677±4.37 N/A N/A N/A N/A N/A N/A N/A N/A 18.226±1.83
ENSMUST00000159961 3.734±0.00 4.500±0.00 N/A 9.110±0.00 5.267±2.09 4.199±0.41 2.761±0.91 4.087±0.32 1.743±0.58 N/A 1.430±0.32 18.407±1.93 5.064±2.19 7.071±4.23
ENSMUST00000161067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.905±2.63 N/A
ENSMUST00000162188 N/A N/A N/A 48.058±0.00 N/A N/A N/A N/A N/A N/A N/A 100.141±0.00 30.521±4.91 142.182±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001967 IMP suckling behavior
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006878 phf21aa PHD finger protein 21Aa protein_coding Danio_rerio
ENSDARG00000021378 phf21ab PHD finger protein 21Ab protein_coding Danio_rerio
ENSG00000135365 PHF21A PHD finger protein 21A protein_coding Homo_sapiens

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