C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: empty spiracles homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135638 EMX1 9606 + 2:72916260-72936071 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258106 EMX1-001 72917475-72934891 protein_coding
  ENST00000394111 EMX1-002 72916260-72934328 protein_coding
  ENST00000464675 EMX1-005 72923988-72934239 retained_intron
  ENST00000473732 EMX1-003 72918181-72925541 protein_coding
  ENST00000491023 EMX1-004 72923414-72934364 processed_transcript
  ENST00000616281 EMX1-006 72933172-72936071 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverOvaryPlacentaTestisENST00000258106ENST00000394111ENST00000464675ENST00000616281
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Ovary Placenta Testis
ENST00000258106 N/A N/A N/A 0.018±0.00 N/A 0.048±0.00 N/A N/A N/A N/A
ENST00000394111 N/A N/A 0.514±0.00 0.081±0.00 0.096±0.00 N/A N/A N/A N/A 1.857±0.00
ENST00000464675 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.885±0.00
ENST00000616281 0.014±0.00 0.819±0.00 N/A N/A 0.198±0.00 N/A 0.006±0.00 0.078±0.03 0.023±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0001 VISTA 2:72597601-73198962
CIL_0008RW CIL_0008RW_0001 VISTA 2:72647671-73248640
CIL_0003EH CIL_0003EH_0001 CGP 2:72887360-72936071
CIL_0002DU CIL_0002DU_0002 CGP 2:72916260-73075619

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IEA brain development
GO:0009791 IEA post-embryonic development
GO:0021796 IEA cerebral cortex regionalization
GO:0021895 IEA cerebral cortex neuron differentiation
GO:0021987 IEA cerebral cortex development
GO:0030182 IEA neuron differentiation
GO:0042493 IEA response to drug
GO:0043565 IEA sequence-specific DNA binding
GO:0048854 IEA brain morphogenesis
GO:1990138 IEA neuron projection extension

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039569 emx1 empty spiracles homeobox 1 protein_coding Danio_rerio
ENSMUSG00000033726 Emx1 empty spiracles homeobox 1 protein_coding Mus_musculus

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