C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003EH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000116096-ENSG00000135638 CGP 9606 2:72887360-72936071
GeneTranscriptPositionBiotype
ENSG00000116096 (SPR)
sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) 		ENST00000234454 (SPR-001) 72887360-72892158 protein_coding
ENST00000498749 (SPR-002) 72887382-72891753 processed_transcript
ENSG00000135638 (EMX1)
empty spiracles homeobox 1 		ENST00000258106 (EMX1-001) 72917475-72934891 protein_coding
ENST00000394111 (EMX1-002) 72916260-72934328 protein_coding
ENST00000464675 (EMX1-005) 72923988-72934239 retained_intron
ENST00000473732 (EMX1-003) 72918181-72925541 protein_coding
ENST00000491023 (EMX1-004) 72923414-72934364 processed_transcript
ENST00000616281 (EMX1-006) 72933172-72936071 retained_intron
ENSG00000278060 (RP11-466M21.1)
 ENST00000615411 (RP11-466M21.1-001) 72932974-72934355 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003EH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033735-ENSMUSG00000033726 CGP 10090 6:85133678-85204462
GeneTranscriptPositionBiotype
ENSMUSG00000033726 (Emx1)
empty spiracles homeobox 1 		ENSMUST00000045942 (Emx1-001) 85187438-85204358 protein_coding
ENSMUST00000173919 (Emx1-002) 85193519-85204462 retained_intron
ENSMUSG00000033735 (Spr)
sepiapterin reductase 		ENSMUST00000045986 (Spr-001) 85133678-85137766 protein_coding
ENSMUST00000174286 (Spr-004) 85134098-85137762 protein_coding
ENSMUST00000174769 (Spr-002) 85133687-85137756 protein_coding
ENSMUSG00000068303 (Spr-ps1)
sepiapterin reductase pseudogene 1 		ENSMUST00000089584 (Spr-ps1-001) 85155005-85155968 transcribed_unprocessed_pseudogene
ENSMUST00000186281 (Spr-ps1-003) 85155208-85156223 processed_transcript
ENSMUST00000187705 (Spr-ps1-002) 85152621-85155512 processed_transcript
ENSMUSG00000072950 (Gm10444)
predicted pseudogene 10444 		ENSMUST00000126708 (Gm10444-001) 85140505-85143649 unprocessed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003EH_0001ENSG00000116096ENST00000234454ENST00000498749ENSG00000135638ENST00000258106ENST00000394111ENST00000464675ENST00000473732ENST00000491023ENST00000616281ENSG00000278060ENST00000615411CIL_0003EH_0002ENSMUSG00000033726ENSMUST00000045942ENSMUST00000173919ENSMUSG00000033735ENSMUST00000045986ENSMUST00000174286ENSMUST00000174769ENSMUSG00000068303ENSMUST00000089584ENSMUST00000186281ENSMUST00000187705ENSMUSG00000072950ENSMUST00000126708
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003EH_0001ENSG00000116096ENST00000234454ENST00000498749ENSG00000135638ENST00000258106ENST00000394111ENST00000464675ENST00000616281ENSG00000278060ENST00000615411CIL_0003EH_0002ENSMUSG00000033726ENSMUST00000045942ENSMUST00000173919ENSMUSG00000033735ENSMUST00000045986ENSMUST00000174286ENSMUSG00000068303ENSMUST00000089584ENSMUST00000186281ENSMUST00000187705ENSMUSG00000072950ENSMUST00000126708
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116096 ENST00000234454 15.698±0.00 8.475±0.00 1.455±0.00 3.138±2.15 13.711±12.32 13.363±8.73 9.353±8.62 19.886±11.90 23.377±20.08 6.621±5.62 23.646±20.95 23.986±18.56 12.330±4.16 11.930±9.05
ENST00000498749 N/A N/A N/A 1.069±0.00 1.300±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000135638 ENST00000258106 N/A N/A N/A N/A 0.018±0.00 N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000394111 N/A N/A N/A 0.514±0.00 0.081±0.00 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A 1.857±0.00
ENST00000464675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.885±0.00
ENST00000473732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616281 N/A 0.014±0.00 0.819±0.00 N/A N/A 0.198±0.00 N/A N/A 0.006±0.00 N/A N/A 0.078±0.03 0.023±0.00 N/A
ENSG00000278060 ENST00000615411 N/A N/A N/A 5.472±3.10 N/A N/A N/A 34.257±0.00 N/A N/A N/A N/A 0.170±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033726 ENSMUST00000045942 0.016±0.00 0.019±0.00 0.021±0.00 13.579±8.45 N/A N/A N/A 24.408±5.44 0.060±0.07 N/A N/A 0.043±0.02 0.247±0.13 N/A
ENSMUST00000173919 0.059±0.00 0.067±0.03 0.016±0.00 4.240±2.88 0.044±0.01 0.129±0.10 N/A N/A 0.011±0.00 N/A 0.071±0.00 0.086±0.02 0.057±0.05 0.054±0.02
ENSMUSG00000033735 ENSMUST00000045986 8.927±0.51 14.597±3.01 8.787±2.26 9.105±8.12 6.755±2.74 18.335±1.25 12.318±1.75 29.113±2.77 17.005±8.31 14.101±1.52 19.539±1.49 14.092±7.49 11.252±3.20 0.922±0.26
ENSMUST00000174286 3.029±0.00 7.107±3.74 N/A 22.614±0.00 1.924±0.00 4.715±0.38 N/A N/A N/A N/A N/A 12.166±17.03 11.108±3.45 0.943±0.00
ENSMUST00000174769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000068303 ENSMUST00000089584 0.915±0.17 0.360±0.22 N/A N/A 0.537±0.18 0.234±0.00 0.525±0.13 1.949±0.55 0.234±0.13 1.575±0.79 0.056±0.00 1.226±0.39 N/A N/A
ENSMUST00000186281 0.242±0.05 N/A N/A 5.302±3.70 0.240±0.05 0.280±0.10 N/A 1.954±0.60 0.272±0.13 0.356±0.00 0.106±0.00 1.024±0.38 N/A 0.217±0.00
ENSMUST00000187705 0.105±0.02 0.034±0.01 0.214±0.00 0.538±0.00 0.140±0.06 0.481±0.15 0.046±0.01 0.219±0.04 0.118±0.06 0.116±0.03 0.040±0.02 0.271±0.13 0.350±0.23 0.388±0.25
ENSMUSG00000072950 ENSMUST00000126708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.490±0.00 N/A

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