C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: empty spiracles homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033726 Emx1 10090 + 6:85187438-85204462 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045942 Emx1-001 85187438-85204358 protein_coding
  ENSMUST00000173919 Emx1-002 85193519-85204462 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000045942ENSMUST00000173919
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000045942 0.016±0.00 0.019±0.00 0.021±0.00 13.579±8.45 N/A N/A 24.408±5.44 0.060±0.07 N/A 0.043±0.02 0.247±0.13 N/A
ENSMUST00000173919 0.059±0.00 0.067±0.03 0.016±0.00 4.240±2.88 0.044±0.01 0.129±0.10 N/A 0.011±0.00 0.071±0.00 0.086±0.02 0.057±0.05 0.054±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0002 VISTA 6:84864955-85466474
CIL_0008RW CIL_0008RW_0002 VISTA 6:84918005-85518946
CIL_0003EH CIL_0003EH_0002 CGP 6:85133678-85204462
CIL_0002DU CIL_0002DU_0003 CGP 6:85187438-85333422

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IGI in utero embryonic development
GO:0005515 IEA protein binding
GO:0005634 ISO nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IMP brain development
GO:0009791 IMP post-embryonic development
GO:0021796 IGI cerebral cortex regionalization
GO:0021895 IGI cerebral cortex neuron differentiation
GO:0021987 IGI cerebral cortex development
GO:0030182 IMP neuron differentiation
GO:0042493 IDA response to drug
GO:0043565 IEA sequence-specific DNA binding
GO:0048854 IGI brain morphogenesis
GO:1990138 IGI neuron projection extension

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039569 emx1 empty spiracles homeobox 1 protein_coding Danio_rerio
ENSG00000135638 EMX1 empty spiracles homeobox 1 protein_coding Homo_sapiens

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