C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: empty spiracles homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258106 EMX1-001 ENSG00000135638 9606 + 2:72917475-72934891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartENST00000258106
Transcript ID Breast Heart
ENST00000258106 0.018±0.00 0.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087O CIL_00087O_0001 VISTA 2:72597601-73198962
CIL_0008RW CIL_0008RW_0001 VISTA 2:72647671-73248640
CIL_0003EH CIL_0003EH_0001 CGP 2:72887360-72936071
CIL_0002DU CIL_0002DU_0002 CGP 2:72916260-73075619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IEA brain development
GO:0009791 IEA post-embryonic development
GO:0021796 IEA cerebral cortex regionalization
GO:0021895 IEA cerebral cortex neuron differentiation
GO:0021987 IEA cerebral cortex development
GO:0030182 IEA neuron differentiation
GO:0042493 IEA response to drug
GO:0043565 IEA sequence-specific DNA binding
GO:0048854 IEA brain morphogenesis
GO:1990138 IEA neuron projection extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045942 Emx1-001 protein_coding Mus_musculus 0 1476
ENSMUST00000173919 Emx1-002 retained_intron Mus_musculus 0 837
ENSMUST00000048572 Hlx-001 protein_coding Mus_musculus 0.00000007 64

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