C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: beta-carotene oxygenase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135697 BCO1 9606 + 16:81238448-81291142 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258168 BCO1-001 81238448-81291142 protein_coding
  ENST00000563804 BCO1-002 81238689-81290700 nonsense_mediated_decay
  ENST00000564552 BCO1-003 81238691-81262543 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000258168ENST00000563804ENST00000564552
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000258168 N/A N/A N/A 0.382±0.00 N/A 0.190±0.00 0.574±0.00 0.225±0.20 0.261±0.20 0.058±0.01 0.113±0.05
ENST00000563804 0.036±0.00 0.076±0.00 0.443±0.00 N/A 0.042±0.00 N/A 0.026±0.00 N/A 0.173±0.15 0.032±0.01 0.093±0.00
ENST00000564552 0.051±0.00 N/A N/A N/A N/A 0.303±0.00 N/A 0.254±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019F CIL_00019F_0001 CGP 16:81238448-81390884

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 IDA retinoid metabolic process
GO:0003834 IDA beta-carotene 15,15'-monooxygenase activity
GO:0004497 IEA monooxygenase activity
GO:0005829 TAS cytosol
GO:0007603 TAS phototransduction, visible light
GO:0035238 NAS vitamin A biosynthetic process
GO:0042572 IEA retinol metabolic process
GO:0042574 NAS retinal metabolic process
GO:0046872 IEA metal ion binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029446 bcmo1l beta-carotene 15,15'-monooxygenase 1-like protein_coding Danio_rerio
ENSDARG00000034369 bcmo1 beta-carotene 15,15'-monooxygenase 1 protein_coding Danio_rerio
ENSMUSG00000031845 Bcmo1 beta-carotene oxygenase 1 protein_coding Mus_musculus

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