C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00019F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135697-ENSG00000261609 CGP 9606 16:81238448-81390884
GeneTranscriptPositionBiotype
ENSG00000135697 (BCO1)
beta-carotene oxygenase 1 		ENST00000258168 (BCO1-001) 81238448-81291142 protein_coding
ENST00000563804 (BCO1-002) 81238689-81290700 nonsense_mediated_decay
ENST00000564552 (BCO1-003) 81238691-81262543 protein_coding
ENSG00000260495 (RP11-55K13.1)
 ENST00000570148 (RP11-55K13.1-001) 81310731-81313423 antisense
ENSG00000272923 (RP11-391L3.1)
 ENST00000563750 (RP11-391L3.1-002) 81385463-81387560 lincRNA
ENSG00000280182 (RP11-626G3.1)
 ENST00000625028 (RP11-626G3.1-001) 81261924-81264091 TEC
CIL_00019F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031845-ENSMUSG00000052557 CGP 10090 8:117095854-117205834
GeneTranscriptPositionBiotype
ENSMUSG00000031845 (Bcmo1)
beta-carotene oxygenase 1 		ENSMUST00000034308 (Bcmo1-001) 117095854-117133720 protein_coding
ENSMUST00000167370 (Bcmo1-201) 117095865-117131218 protein_coding
ENSMUST00000176860 (Bcmo1-002) 117095998-117133316 protein_coding
ENSMUSG00000052557 (Gan)
giant axonal neuropathy 		ENSMUST00000064488 (Gan-201) 117158135-117205186 protein_coding
ENSMUST00000162997 (Gan-001) 117158137-117205834 protein_coding
ENSMUSG00000093446 (Gm20694)
predicted gene 20694 		ENSMUST00000176943 (Gm20694-001) 117125335-117125738 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00019F_0001ENSG00000135697ENST00000258168ENST00000563804ENST00000564552ENSG00000260495ENST00000570148ENSG00000272923ENST00000563750ENSG00000280182ENST00000625028CIL_00019F_0002ENSMUSG00000031845ENSMUST00000034308ENSMUST00000167370ENSMUST00000176860ENSMUSG00000052557ENSMUST00000064488ENSMUST00000162997ENSMUSG00000093446ENSMUST00000176943
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00019F_0001ENSG00000135697ENST00000258168ENST00000563804ENST00000564552ENSG00000260495ENST00000570148ENSG00000272923ENST00000563750ENSG00000280182ENST00000625028CIL_00019F_0002ENSMUSG00000031845ENSMUST00000034308ENSMUST00000167370ENSMUST00000176860ENSMUSG00000052557ENSMUST00000064488ENSMUST00000162997ENSMUSG00000093446ENSMUST00000176943
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135697 ENST00000258168 N/A N/A N/A 0.382±0.00 N/A 0.190±0.00 N/A 0.574±0.00 0.225±0.20 N/A N/A 0.261±0.20 0.058±0.01 0.113±0.05
ENST00000563804 0.036±0.00 0.076±0.00 0.443±0.00 N/A 0.042±0.00 N/A N/A 0.026±0.00 N/A N/A N/A 0.173±0.15 0.032±0.01 0.093±0.00
ENST00000564552 0.051±0.00 N/A N/A N/A N/A 0.303±0.00 N/A N/A 0.254±0.00 N/A N/A N/A N/A N/A
ENSG00000260495 ENST00000570148 0.047±0.00 0.359±0.00 0.247±0.00 0.440±0.08 0.244±0.17 0.128±0.02 0.045±0.01 0.091±0.07 0.045±0.01 0.221±0.15 0.096±0.00 0.116±0.07 0.034±0.00 0.147±0.04
ENSG00000272923 ENST00000563750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.508±0.00 1.069±0.00 1.396±0.00
ENSG00000280182 ENST00000625028 N/A 0.389±0.00 N/A 0.256±0.19 0.164±0.13 N/A 0.111±0.00 0.501±0.00 N/A N/A 0.058±0.00 0.058±0.00 0.033±0.00 0.324±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031845 ENSMUST00000034308 0.066±0.03 N/A 0.044±0.01 0.026±0.02 0.167±0.01 0.345±0.10 0.013±0.00 1.086±0.29 3.027±0.71 0.106±0.02 0.017±0.00 0.117±0.05 2.156±1.78 7.082±3.29
ENSMUST00000167370 0.014±0.00 N/A N/A 0.020±0.00 0.150±0.07 0.608±0.15 0.024±0.01 0.243±0.05 N/A 0.040±0.00 0.015±0.00 0.187±0.08 0.792±0.00 N/A
ENSMUST00000176860 N/A N/A N/A N/A N/A 0.254±0.14 N/A 0.235±0.00 N/A 0.078±0.00 N/A 0.166±0.00 0.211±0.15 N/A
ENSMUSG00000052557 ENSMUST00000064488 0.734±0.38 1.513±0.15 N/A N/A 1.494±0.78 1.343±0.36 0.370±0.07 0.733±0.26 0.299±0.13 1.821±0.17 0.217±0.08 1.460±0.51 0.755±0.39 0.509±0.13
ENSMUST00000162997 1.050±0.00 N/A N/A 2.086±0.00 1.172±0.15 1.068±0.24 0.259±0.09 0.536±0.10 0.426±0.16 1.386±0.34 0.281±0.09 1.517±0.88 1.126±0.46 0.468±0.11
ENSMUSG00000093446 ENSMUST00000176943 N/A N/A N/A N/A N/A N/A N/A N/A 0.085±0.06 N/A N/A N/A 0.444±0.36 1.226±1.44

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