C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beta-carotene oxygenase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258168 BCO1-001 ENSG00000135697 9606 + 16:81238448-81291142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverOvaryPlacentaTestisENST00000258168
Transcript ID Brain Colon Kidney Liver Ovary Placenta Testis
ENST00000258168 0.382±0.00 0.190±0.00 0.574±0.00 0.225±0.20 0.261±0.20 0.058±0.01 0.113±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019F CIL_00019F_0001 CGP 16:81238448-81390884

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 IDA retinoid metabolic process
GO:0003834 IDA beta-carotene 15,15'-monooxygenase activity
GO:0004497 IEA monooxygenase activity
GO:0005829 TAS cytosol
GO:0007603 TAS phototransduction, visible light
GO:0035238 NAS vitamin A biosynthetic process
GO:0042572 IEA retinol metabolic process
GO:0042574 NAS retinal metabolic process
GO:0046872 IEA metal ion binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034308 Bcmo1-001 protein_coding Mus_musculus 0 1594
ENSMUST00000167370 Bcmo1-201 protein_coding Mus_musculus 0 1439
ENSMUST00000176860 Bcmo1-002 protein_coding Mus_musculus 0 1439

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