C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: component of oligomeric golgi complex 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135775 COG2 9606 + 1:230642489-230693982 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000366668 COG2-002 230642567-230693982 protein_coding
  ENST00000366669 COG2-001 230642492-230693982 protein_coding
  ENST00000468893 COG2-009 230642505-230693625 nonsense_mediated_decay
  ENST00000473671 COG2-004 230642521-230660873 retained_intron
  ENST00000478710 COG2-008 230689961-230691819 processed_transcript
  ENST00000482012 COG2-006 230684323-230688528 processed_transcript
  ENST00000490900 COG2-007 230687990-230690319 processed_transcript
  ENST00000494371 COG2-003 230642489-230683428 retained_intron
  ENST00000534989 COG2-010 230642811-230693981 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366668ENST00000366669ENST00000468893ENST00000473671ENST00000478710ENST00000494371
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366668 1.449±0.00 N/A 1.711±0.00 N/A 2.283±0.00 1.435±0.00 1.011±0.51 1.839±0.00 1.173±0.00 N/A 1.470±0.00 1.927±0.00 0.910±0.00 N/A
ENST00000366669 3.088±0.00 10.536±0.00 N/A 4.663±0.16 2.125±0.52 2.994±0.27 3.655±2.01 10.397±0.00 2.587±0.00 2.083±0.34 9.149±0.00 6.128±2.34 3.928±0.27 7.463±0.62
ENST00000468893 N/A N/A N/A N/A 1.493±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473671 N/A N/A 3.844±0.00 N/A N/A N/A N/A N/A N/A 3.782±0.00 N/A N/A 6.948±0.00 N/A
ENST00000478710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.295±0.00 5.988±0.00 15.948±0.00
ENST00000494371 N/A N/A N/A 0.492±0.00 N/A N/A 0.211±0.00 N/A N/A 0.612±0.00 N/A 0.522±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060Z CIL_00060Z_0001 CGP 1:230314482-230693982
CIL_0007WK CIL_0007WK_0001 VISTA 1:230548777-231152235
CIL_000610 CIL_000610_0001 CGP 1:230642489-230714297

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005515 IPI protein binding
GO:0005795 IDA Golgi stack
GO:0005829 IEA cytosol
GO:0006486 TAS protein glycosylation
GO:0006886 TAS intracellular protein transport
GO:0006891 IMP intra-Golgi vesicle-mediated transport
GO:0007030 IMP Golgi organization
GO:0008565 IMP protein transporter activity
GO:0009312 TAS oligosaccharide biosynthetic process
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017119 IDA Golgi transport complex
GO:0032403 IEA protein complex binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004037 cog2 component of oligomeric golgi complex 2 protein_coding Danio_rerio
ENSMUSG00000031979 Cog2 component of oligomeric golgi complex 2 protein_coding Mus_musculus

Loading