C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: component of oligomeric golgi complex 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031979 Cog2 10090 + 8:124520767-124552008 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034460 Cog2-001 124520767-124552008 protein_coding
  ENSMUST00000108803 Cog2-003 124520805-124545774 retained_intron
  ENSMUST00000129977 Cog2-002 124535209-124544393 retained_intron
  ENSMUST00000176159 Cog2-004 124520804-124529931 nonsense_mediated_decay
  ENSMUST00000176279 Cog2-005 124520819-124529903 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034460ENSMUST00000108803ENSMUST00000129977ENSMUST00000176159
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034460 12.135±0.86 8.158±1.43 10.736±0.89 9.756±2.40 6.189±2.03 15.772±1.82 3.478±0.74 10.219±0.82 6.775±1.81 6.854±1.07 3.672±0.65 11.957±2.92 11.421±1.80 7.278±0.79
ENSMUST00000108803 N/A 1.432±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129977 2.652±0.00 1.386±0.00 N/A N/A N/A 4.267±0.00 0.949±0.00 N/A N/A N/A N/A 2.823±0.00 N/A N/A
ENSMUST00000176159 N/A N/A N/A 40.778±0.00 N/A N/A N/A N/A N/A N/A N/A 54.479±0.00 30.866±1.14 16.705±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A0 CIL_0008A0_0002 VISTA 8:123980149-124582109
CIL_0007WK CIL_0007WK_0002 VISTA 8:124343702-124945898
CIL_00060Z CIL_00060Z_0002 CGP 8:124369049-124552008
CIL_000610 CIL_000610_0002 CGP 8:124520767-124569706

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005795 IEA Golgi stack
GO:0005829 IEA cytosol
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0007030 IEA Golgi organization
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017119 IEA Golgi transport complex
GO:0032403 IEA protein complex binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004037 cog2 component of oligomeric golgi complex 2 protein_coding Danio_rerio
ENSG00000135775 COG2 component of oligomeric golgi complex 2 protein_coding Homo_sapiens

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