C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger and CCCH-type domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135870 RC3H1 9606 - 1:173931214-174022297 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258349 RC3H1-201 173931214-173993064 protein_coding
  ENST00000367694 RC3H1-001 173938411-173993072 protein_coding
  ENST00000367696 RC3H1-003 173931214-174022297 protein_coding
  ENST00000479099 RC3H1-005 173938576-173941449 retained_intron
  ENST00000484867 RC3H1-002 173980949-173983033 retained_intron
  ENST00000531594 RC3H1-004 173961033-173961815 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000258349ENST00000367694ENST00000367696
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000258349 1.180±0.00 0.688±0.00 N/A 1.116±0.00 1.456±0.00 0.946±0.54 1.328±0.00 2.777±0.00 0.539±0.29 0.727±0.39 3.176±0.00 0.102±0.00 1.517±0.00
ENST00000367694 N/A N/A 2.189±0.00 1.540±0.00 2.070±0.00 2.648±0.00 1.403±0.00 N/A 4.517±0.00 3.199±0.00 2.270±0.00 N/A 3.090±0.00
ENST00000367696 1.336±0.00 0.638±0.00 N/A N/A 0.584±0.00 N/A N/A N/A 1.154±0.00 0.778±0.45 0.950±0.73 0.315±0.00 2.275±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0000956 ISS nuclear-transcribed mRNA catabolic process
GO:0001782 IEA B cell homeostasis
GO:0002634 ISS regulation of germinal center formation
GO:0002635 ISS negative regulation of germinal center formation
GO:0003729 IEA mRNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0004842 TAS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0010468 IEA regulation of gene expression
GO:0010494 ISS cytoplasmic stress granule
GO:0010608 ISS posttranscriptional regulation of gene expression
GO:0016567 TAS protein ubiquitination
GO:0030889 ISS negative regulation of B cell proliferation
GO:0033962 ISS cytoplasmic mRNA processing body assembly
GO:0042098 IEA T cell proliferation
GO:0043029 IEA T cell homeostasis
GO:0043488 ISS regulation of mRNA stability
GO:0044822 IDA poly(A) RNA binding
GO:0045623 ISS negative regulation of T-helper cell differentiation
GO:0046007 ISS negative regulation of activated T cell proliferation
GO:0046872 IEA metal ion binding
GO:0048535 IEA lymph node development
GO:0048536 IEA spleen development
GO:0050856 ISS regulation of T cell receptor signaling pathway
GO:0061470 IEA T follicular helper cell differentiation
GO:1901224 IEA positive regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062550 rc3h1 ring finger and CCCH-type zinc finger domains 1 protein_coding Danio_rerio
ENSDARG00000063182 RC3H1 (2 of 2) ring finger and CCCH-type domains 1 protein_coding Danio_rerio
ENSMUSG00000040423 Rc3h1 RING CCCH (C3H) domains 1 protein_coding Mus_musculus

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