C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RING CCCH (C3H) domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040423 Rc3h1 10090 + 1:160906418-160974978 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035911 Rc3h1-002 160930024-160967817 protein_coding
  ENSMUST00000161609 Rc3h1-001 160906418-160974978 protein_coding
  ENSMUST00000161708 Rc3h1-003 160950977-160952131 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035911ENSMUST00000161609
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035911 5.693±1.44 6.235±1.05 N/A 2.061±0.00 8.735±1.48 6.168±0.86 2.931±0.80 4.143±1.18 2.438±0.34 5.402±2.40 N/A 7.434±3.37 4.462±1.31 14.350±3.82
ENSMUST00000161609 3.901±0.74 3.288±0.80 4.091±0.58 3.277±1.31 3.943±0.87 3.279±0.86 2.400±0.21 2.324±0.63 2.500±0.64 4.731±0.21 2.450±0.58 4.850±1.06 3.651±1.16 2.196±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005CR CIL_0005CR_0002 CGP 1:160906418-161003010

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0000956 IMP nuclear-transcribed mRNA catabolic process
GO:0001782 IGI B cell homeostasis
GO:0002634 IMP regulation of germinal center formation
GO:0002635 IMP negative regulation of germinal center formation
GO:0003729 IDA mRNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0010468 IDA regulation of gene expression
GO:0010494 IDA cytoplasmic stress granule
GO:0010608 IDA posttranscriptional regulation of gene expression
GO:0030889 IMP negative regulation of B cell proliferation
GO:0033962 IMP cytoplasmic mRNA processing body assembly
GO:0042098 IGI T cell proliferation
GO:0043029 IGI T cell homeostasis
GO:0043488 IMP regulation of mRNA stability
GO:0044822 IEA poly(A) RNA binding
GO:0045623 IMP negative regulation of T-helper cell differentiation
GO:0046007 IMP negative regulation of activated T cell proliferation
GO:0048535 IGI lymph node development
GO:0048536 IGI spleen development
GO:0050856 IMP regulation of T cell receptor signaling pathway
GO:0061470 IGI T follicular helper cell differentiation
GO:1901224 IDA positive regulation of NIK/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062550 rc3h1 ring finger and CCCH-type zinc finger domains 1 protein_coding Danio_rerio
ENSDARG00000063182 RC3H1 (2 of 2) ring finger and CCCH-type domains 1 protein_coding Danio_rerio
ENSG00000135870 RC3H1 ring finger and CCCH-type domains 1 protein_coding Homo_sapiens

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