C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cholinergic receptor, nicotinic, delta (muscle)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135902 CHRND 9606 + 2:232525993-232536667 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258385 CHRND-001 232526184-232535838 protein_coding
  ENST00000412233 CHRND-004 232526188-232531627 nonsense_mediated_decay
  ENST00000441621 CHRND-002 232525993-232536667 nonsense_mediated_decay
  ENST00000446616 CHRND-005 232526191-232535345 nonsense_mediated_decay
  ENST00000449596 CHRND-003 232526160-232528913 protein_coding
  ENST00000543200 CHRND-201 232526160-232536665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartMuscleOvaryTestisENST00000258385ENST00000441621ENST00000446616ENST00000449596ENST00000543200
Transcript ID Adrenal Brain Breast Colon Heart Muscle Ovary Testis
ENST00000258385 N/A N/A N/A N/A N/A 3.938±0.00 0.060±0.00 N/A
ENST00000441621 N/A N/A 0.132±0.00 N/A N/A 4.559±1.71 0.036±0.00 N/A
ENST00000446616 0.125±0.00 N/A N/A N/A N/A 7.228±0.00 N/A 0.098±0.00
ENST00000449596 N/A 0.107±0.00 0.407±0.00 0.100±0.00 N/A N/A 0.085±0.00 N/A
ENST00000543200 N/A N/A N/A 0.150±0.00 0.007±0.00 11.136±5.29 N/A 0.521±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HT CIL_0003HT_0001 CGP 2:232520463-232536667
CIL_0003HU CIL_0003HU_0001 CGP 2:232525993-232546403

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003009 IEA skeletal muscle contraction
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005892 IEA acetylcholine-gated channel complex
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0006812 TAS cation transport
GO:0006936 TAS muscle contraction
GO:0007165 TAS signal transduction
GO:0007268 TAS synaptic transmission
GO:0015276 IEA ligand-gated ion channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport
GO:0042166 IEA acetylcholine binding
GO:0042391 IEA regulation of membrane potential
GO:0045211 NAS postsynaptic membrane
GO:0048630 IMP skeletal muscle tissue growth
GO:0050881 IMP musculoskeletal movement
GO:0050905 NAS neuromuscular process
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019342 chrnd cholinergic receptor, nicotinic, delta polypeptide protein_coding Danio_rerio
ENSMUSG00000026251 Chrnd cholinergic receptor, nicotinic, delta polypeptide protein_coding Mus_musculus

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