C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003HU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135902-ENSG00000196811 CGP 9606 2:232525993-232546403
GeneTranscriptPositionBiotype
ENSG00000135902 (CHRND)
cholinergic receptor, nicotinic, delta (muscle) 		ENST00000258385 (CHRND-001) 232526184-232535838 protein_coding
ENST00000412233 (CHRND-004) 232526188-232531627 nonsense_mediated_decay
ENST00000441621 (CHRND-002) 232525993-232536667 nonsense_mediated_decay
ENST00000446616 (CHRND-005) 232526191-232535345 nonsense_mediated_decay
ENST00000449596 (CHRND-003) 232526160-232528913 protein_coding
ENST00000543200 (CHRND-201) 232526160-232536665 protein_coding
ENSG00000196811 (CHRNG)
cholinergic receptor, nicotinic, gamma (muscle) 		ENST00000389492 (CHRNG-004) 232539748-232545716 protein_coding
ENST00000389494 (CHRNG-001) 232539727-232546403 protein_coding
ENST00000485094 (CHRNG-003) 232539727-232541882 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0003HU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026251-ENSMUSG00000026253 CGP 10090 1:87190607-87212694
GeneTranscriptPositionBiotype
ENSMUSG00000026251 (Chrnd)
cholinergic receptor, nicotinic, delta polypeptide 		ENSMUST00000073252 (Chrnd-001) 87190637-87200070 protein_coding
ENSMUST00000186373 (Chrnd-002) 87190844-87200069 protein_coding
ENSMUST00000189970 (Chrnd-003) 87190607-87191766 retained_intron
ENSMUSG00000026253 (Chrng)
cholinergic receptor, nicotinic, gamma polypeptide 		ENSMUST00000027470 (Chrng-001) 87205811-87212694 protein_coding
ENSMUST00000185763 (Chrng-002) 87204657-87208296 protein_coding
ENSMUST00000186038 (Chrng-003) 87205885-87208295 protein_coding
ENSMUST00000188796 (Chrng-005) 87205810-87208295 protein_coding
ENSMUST00000189392 (Chrng-004) 87206074-87208595 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003HU_0001ENSG00000135902ENST00000258385ENST00000412233ENST00000441621ENST00000446616ENST00000449596ENST00000543200ENSG00000196811ENST00000389492ENST00000389494ENST00000485094CIL_0003HU_0002ENSMUSG00000026251ENSMUST00000073252ENSMUST00000186373ENSMUST00000189970ENSMUSG00000026253ENSMUST00000027470ENSMUST00000185763ENSMUST00000186038ENSMUST00000188796ENSMUST00000189392
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003HU_0001ENSG00000135902ENST00000258385ENST00000441621ENST00000446616ENST00000449596ENST00000543200ENSG00000196811ENST00000389492ENST00000389494ENST00000485094CIL_0003HU_0002ENSMUSG00000026251ENSMUST00000073252ENSMUST00000186373ENSMUST00000189970ENSMUSG00000026253ENSMUST00000027470ENSMUST00000185763ENSMUST00000186038ENSMUST00000188796ENSMUST00000189392
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135902 ENST00000258385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.938±0.00 0.060±0.00 N/A N/A
ENST00000412233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441621 N/A N/A N/A N/A 0.132±0.00 N/A N/A N/A N/A N/A 4.559±1.71 0.036±0.00 N/A N/A
ENST00000446616 N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 7.228±0.00 N/A N/A 0.098±0.00
ENST00000449596 N/A N/A N/A 0.107±0.00 0.407±0.00 0.100±0.00 N/A N/A N/A N/A N/A 0.085±0.00 N/A N/A
ENST00000543200 N/A N/A N/A N/A N/A 0.150±0.00 0.007±0.00 N/A N/A N/A 11.136±5.29 N/A N/A 0.521±0.44
ENSG00000196811 ENST00000389492 N/A N/A N/A 0.049±0.00 0.045±0.00 N/A N/A N/A 0.018±0.00 N/A 1.944±0.00 N/A N/A N/A
ENST00000389494 N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A N/A N/A 2.926±0.00 0.120±0.04 0.027±0.00 0.173±0.04
ENST00000485094 N/A N/A N/A 0.038±0.00 0.425±0.00 N/A N/A N/A N/A N/A N/A N/A 0.149±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026251 ENSMUST00000073252 N/A N/A N/A 0.079±0.00 0.163±0.02 0.012±0.00 N/A 0.007±0.00 0.034±0.06 0.191±0.03 0.845±0.23 0.189±0.08 0.003±0.00 0.027±0.02
ENSMUST00000186373 N/A N/A N/A N/A N/A 0.005±0.00 N/A 0.001±0.00 0.001±0.00 N/A N/A 0.144±0.05 N/A 0.002±0.00
ENSMUST00000189970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.259±0.04 0.074±0.00 N/A
ENSMUSG00000026253 ENSMUST00000027470 0.015±0.00 0.032±0.00 0.008±0.00 0.119±0.10 0.039±0.01 0.018±0.00 0.016±0.01 0.020±0.00 0.146±0.27 0.018±0.00 0.037±0.01 0.162±0.09 0.028±0.02 0.013±0.00
ENSMUST00000185763 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A 0.357±0.22 N/A 0.068±0.00
ENSMUST00000186038 N/A N/A 0.019±0.00 0.228±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.136±0.00 0.145±0.00 N/A 0.087±0.00
ENSMUST00000189392 N/A N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A 0.037±0.00 N/A 0.035±0.00 0.050±0.03

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