C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: cholinergic receptor, nicotinic, delta (muscle)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000446616 CHRND-005 ENSG00000135902 9606 + 2:232526191-232535345 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalMuscleTestisENST00000446616
Transcript ID Adrenal Muscle Testis
ENST00000446616 0.125±0.00 7.228±0.00 0.098±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HT CIL_0003HT_0001 CGP 2:232520463-232536667
CIL_0003HU CIL_0003HU_0001 CGP 2:232525993-232546403

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0006810 IEA transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 IEA ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186373 Chrnd-002 protein_coding Mus_musculus 0 1421
ENSMUST00000073252 Chrnd-001 protein_coding Mus_musculus 0 1421
ENSMUST00000189970 Chrnd-003 retained_intron Mus_musculus 0 196

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